Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-14/megassr/results/hub_GCA_031283225.1/fasta/hub_GCA_031283225.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              209
Total size of examined sequences (bp):           2431467
Total number of identified SSRs:                 19
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	8
4	3
5	4
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
CCG	-	-	5	1														6
GCG	-	-	1															1
GGC	-	-	1															1
AGAC	-																1	1
GTCT	-				1													1
TTAT	-	1																1
CCTTC	1																	1
GGAAG	1																	1
TATTT	1																	1
TTTAT	1																	1
AAGAAA	1																	1
CGCCTG	1																	1
CGGTAT	1																	1
GCTTCC	1																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
CCG/CGG	-	-	7	1														8
AAAT/ATTT	-	1																1
ACAG/CTGT	-				1												1	2
AAAAT/ATTTT	2																	2
AAGGG/CCCTT	2																	2
AAAAAG/CTTTTT	1																	1
AAGCGG/CCGCTT	1																	1
ACCGAT/ATCGGT	1																	1
AGGCGC/CCTGCG	1																	1
