Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-13/megassr/results/hub_GCA_031283105.1/fasta/hub_GCA_031283105.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              167
Total size of examined sequences (bp):           2791464
Total number of identified SSRs:                 46
Number of SSR containing sequences:              38
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	7
2	2
3	21
4	6
5	6
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1	1																	3
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1																		1	4
TA	-	-	-	1																																		1
TC	-	-	-														1																					1
AAT	-	-	1																																			1
ATC	-	-	1																																			1
CCA	-	-	1																																			1
CCG	-	-	2																																			2
CGG	-	-	7																																			7
GCC	-	-	3																																			3
GCG	-	-	1																																			1
GGC	-	-	2	1																																		3
GGT	-	-	2																																			2
ACAG	-											1																										1
AGAC	-	1					1					1																										3
AGAT	-	1																																				1
TGTC	-																	1																				1
AAAGG	1																																					1
AATAT	1																																					1
ACGGC	1																																					1
CGTTC	1																																					1
GGGCA	1																																					1
GTATT		1																																				1
AAGAAA	1																																					1
CCGCCA	1																																					1
GCCACC		1																																				1
GGCAAC	1																																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	2	1	1																1	7
AG/CT	-	-	-														1																					1
AT/AT	-	-	-	1																																		1
AAT/ATT	-	-	1																																			1
ACC/GGT	-	-	3																																			3
ATC/ATG	-	-	1																																			1
CCG/CGG	-	-	15	1																																		16
ACAG/CTGT	-	1					1					2						1																				5
AGAT/ATCT	-	1																																				1
AAAGG/CCTTT	1																																					1
AACGG/CCGTT	1																																					1
AATAC/ATTGT		1																																				1
AATAT/ATATT	1																																					1
ACGGC/CCGTG	1																																					1
AGGGC/CCCTG	1																																					1
AAAAAG/CTTTTT	1																																					1
AACGGC/CCGTTG	1																																					1
ACCGCC/CGGTGG	1	1																																				2
