Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-18/megassr/results/hub_GCA_031282585.1/fasta/hub_GCA_031282585.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              329
Total size of examined sequences (bp):           2649090
Total number of identified SSRs:                 39
Number of SSR containing sequences:              35
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	6
2	7
3	7
4	2
5	10
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	2	1																																							5
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																										1	1
AG	-	-	-												1																																													1
AT	-	-	-	1																																																								1
CA	-	-	-												1																																													1
CT	-	-	-								1		1																																															2
GA	-	-	-															1																																										1
TG	-	-	-																				1																																					1
CCG	-	-	1																																																									1
CGC	-	-	1																																																									1
GAC	-	-	1																																																									1
GCC	-	-		2																																																								2
GCG	-	-	1																																																									1
GGC	-	-	1																																																									1
CCGT	-		1																																																									1
TGCT	-	1																																																										1
CCCGG	1																																																											1
CCGGC	1																																																											1
CCGGT	1																																																											1
CCTAC	1																																																											1
CGGCC	1																																																											1
CGGTC	1																																																											1
GCCCG	2																																																											2
GGTAC	1																																																											1
TCCCC	1																																																											1
CAGGGC	1																																																											1
CAGGTG	1																																																											1
CCTAAA	1																																																											1
CGGTGG	1																																																											1
GCCGCG	1																																																											1
TAATAG	1																																																											1
TGTTCT	1																																																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	2	1																																						1	6
AC/GT	-	-	-												1								1																																					2
AG/CT	-	-	-								1		1		1			1																																										4
AT/AT	-	-	-	1																																																								1
ACG/CGT	-	-	1																																																									1
CCG/CGG	-	-	4	2																																																								6
AAGC/CTTG	-	1																																																										1
ACGG/CCGT	-		1																																																									1
ACCCT/AGGGT	1																																																											1
ACCGG/CCGGT	2																																																											2
ACCGT/ACGGT	1																																																											1
AGGGG/CCCCT	1																																																											1
CCCGG/CCGGG	5																																																											5
AAACCT/AGGTTT	1																																																											1
AACAAG/CTTGTT	1																																																											1
AATAGT/ACTATT	1																																																											1
ACCGCC/CGGTGG	1																																																											1
ACCTGC/AGGTGC	1																																																											1
AGGGCC/CCCTGG	1																																																											1
CCGCGG/CCGCGG	1																																																											1
