Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-17/megassr/results/hub_GCA_031282065.1/fasta/hub_GCA_031282065.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              179
Total size of examined sequences (bp):           2654367
Total number of identified SSRs:                 35
Number of SSR containing sequences:              29
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	11
3	8
4	2
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1																														1																		1						1	4
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	1																																1				1												1							7
ATC	-	-	1																																																																								1
CCG	-	-	1																																																																								1
CCT	-	-								1																																																																	1
CTC	-	-	2																																																																								2
GCC	-	-	1																																																																								1
GGC	-	-	1																																																																								1
TTC	-	-	1																																																																								1
CAAG	-																				1						1																																																2
AGGCC	1																																																																										1
AGTAT	1																																																																										1
ATACT	1																																																																										1
CCGGA	1																																																																										1
GAAAC	1																																																																										1
GCCCT	1																																																																										1
GGGAA	1																																																																										1
AGGGCC	1																																																																										1
CAAGAA	1																																																																										1
CCAGGG	1																																																																										1
CCTATG	1																																																																										1
GCCCTG	1																																																																										1
GGCAAT			1																																																																								1
TCAATA	1																																																																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	2																														1		1				1												2						1	11
AAG/CTT	-	-	1																																																																								1
AGG/CCT	-	-	2							1																																																																	3
ATC/ATG	-	-	1																																																																								1
CCG/CGG	-	-	3																																																																								3
AAGC/CTTG	-																				1						1																																																2
AAACG/CGTTT	1																																																																										1
AAGGG/CCCTT	1																																																																										1
ACCGG/CCGGT	1																																																																										1
ACTAT/AGTAT	2																																																																										2
AGGCC/CCTGG	1																																																																										1
AGGGC/CCCTG	1																																																																										1
AACAAG/CTTGTT	1																																																																										1
AATATC/ATATTG	1																																																																										1
AATGGC/ATTGCC			1																																																																								1
AGGCAT/ATGCCT	1																																																																										1
AGGGCC/CCCTGG	3																																																																										3
