Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-16/megassr/results/hub_GCA_031281925.1/fasta/hub_GCA_031281925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              276
Total size of examined sequences (bp):           2450480
Total number of identified SSRs:                 10
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
3	2
4	1
5	4
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																							1	1
ATG	-	-	1																																																						1
GCT	-	-		1																																																					1
AAAG	-	1																																																							1
AGAAA	1																																																								1
CCGCC	1																																																								1
GCTTC	1																																																								1
TAAGA	1																																																								1
CGAACC	1																																																								1
CTAACC	1																																																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																							1	1
AGC/CTG	-	-		1																																																					1
ATC/ATG	-	-	1																																																						1
AAAG/CTTT	-	1																																																							1
AAAAG/CTTTT	1																																																								1
AAGAT/ATCTT	1																																																								1
AAGCG/CGCTT	1																																																								1
CCCCG/CGGGG	1																																																								1
AACCCG/CGGGTT	1																																																								1
AACCCT/AGGGTT	1																																																								1
