Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-15/megassr/results/hub_GCA_031281855.1/fasta/hub_GCA_031281855.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              376
Total size of examined sequences (bp):           2450161
Total number of identified SSRs:                 23
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	6
3	1
5	8
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1																1																								2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																														1	1
AG	-	-	-		1				1																																																							2
CA	-	-	-				1																																																									1
CT	-	-	-		1																1																																											2
TG	-	-	-	1																																																												1
GCG	-	-	1																																																													1
CAGGG	1																																																															1
CCCCT	1																																																															1
CCCGG		1																																																														1
GTAAA	1																																																															1
TAGGG	1																																																															1
TATAC	1																																																															1
TGCCC	1																																																															1
TTTCT	1																																																															1
AGGAAA	1																																																															1
GCAGGA	1																																																															1
GGCCTG	1																																																															1
GGCGGG	1																																																															1
TTTCAC	1																																																															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1																1																							1	3
AC/GT	-	-	-	1			1																																																									2
AG/CT	-	-	-		2				1												1																																											4
CCG/CGG	-	-	1																																																													1
AAAAG/CTTTT	1																																																															1
AAAGT/ACTTT	1																																																															1
ACCCT/AGGGT	1																																																															1
ACTAT/AGTAT	1																																																															1
AGGGC/CCCTG	2																																																															2
AGGGG/CCCCT	1																																																															1
CCCGG/CCGGG		1																																																														1
AAAAGG/CCTTTT	1																																																															1
AAAGTG/ACTTTC	1																																																															1
AGCAGG/CCTGCT	1																																																															1
AGGCCC/CCTGGG	1																																																															1
CCCCCG/CGGGGG	1																																																															1
