Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-16/megassr/results/hub_GCA_031277675.1/fasta/hub_GCA_031277675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              372
Total size of examined sequences (bp):           4374943
Total number of identified SSRs:                 54
Number of SSR containing sequences:              44
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	14
3	19
4	1
5	10
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	1		1	2
GC	-	-	-	10	1	1	12
CCG	-	-	3				3
CGC	-	-	6				6
CGG	-	-	2				2
CTG	-	-	3				3
GCA	-	-	1				1
GCC	-	-	1				1
GCG	-	-	1				1
GCT	-	-	2				2
CAGC	-	1					1
CGCCG	1						1
CGCGC	1						1
CGGCG	1						1
GCGCC	1						1
GCGGC	2						2
GCGGG	1						1
GGCGC	1						1
TGCGC	1						1
TGTTT	1						1
ACGCTG	1						1
CAACAG	1						1
CCACCG	1						1
CCGGCA	1						1
CGCCTG	1						1
CGGCAC	1						1
CGGCGA	1						1
CTGGCG	2						2
GGTTTT	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	11	1	2	14
AGC/CTG	-	-	6				6
CCG/CGG	-	-	13				13
AGCC/CTGG	-	1					1
AAAAC/GTTTT	1						1
AGCGC/CGCTG	1						1
CCCCG/CGGGG	1						1
CCGCG/CGCGG	7						7
AAAACC/GGTTTT	1						1
AACAGC/CTGTTG	1						1
ACCGCC/CGGTGG	1						1
ACCGGC/CCGGTG	2						2
ACGCTG/AGCGTC	1						1
ACGGCG/CCGTCG	1						1
AGCGCC/CGCTGG	2						2
AGGCGC/CCTGCG	1						1
