Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-15/megassr/results/hub_GCA_031277655.1/fasta/hub_GCA_031277655.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              258
Total size of examined sequences (bp):           5750230
Total number of identified SSRs:                 26
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	5
5	10
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
GT	-	-	-	1			1
GCC	-	-	2				2
GCG	-	-		1			1
GGC	-	-	1				1
GGT	-	-	1				1
AGGGC	1						1
CACTG	1						1
CAGCG	1						1
CGCAA	1						1
CGCCG	1						1
CTGCC	1						1
GCAGC	1						1
GCGGC	1						1
GGCCG	1						1
TGCGG	1						1
AAGATC						1	1
CCAGGC	1						1
CGTGGG	1						1
GCCTGA	1						1
GCTCTT		1					1
GGCCTG	1						1
GGGCCT	1						1
GGTGCT	1						1
TGCATG	1						1
TTGATC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AC/GT	-	-	-	1			1
ACC/GGT	-	-	1				1
CCG/CGG	-	-	3	1			4
AACGC/CGTTG	1						1
ACCGC/CGGTG	1						1
ACTGC/AGTGC	1						1
AGCGC/CGCTG	2						2
AGGGC/CCCTG	2						2
CCCGG/CCGGG	1						1
CCGCG/CGCGG	2						2
AAGAGC/CTCTTG		1					1
AAGATC/ATCTTG	1					1	2
ACATGC/ATGTGC	1						1
ACCAGC/CTGGTG	1						1
ACGCCC/CGTGGG	1						1
AGCCTG/AGGCTC	1						1
AGGCCC/CCTGGG	3						3
