Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-12/megassr/results/hub_GCA_031277515.1/fasta/hub_GCA_031277515.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              55
Total size of examined sequences (bp):           4489961
Total number of identified SSRs:                 12
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	5
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	1	1
CAG	-	-	1		1
CTG	-	-	1		1
GCG	-	-		1	1
CAGGC	1				1
CATCA		1			1
CTGGA	1				1
GGCGC	1				1
TTTTA	1				1
ATGGTC			1		1
CGGCAT			1		1
TCAACC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	1	1
AGC/CTG	-	-	2		2
CCG/CGG	-	-		1	1
AAAAT/ATTTT	1				1
ACATC/ATGTG		1			1
ACTGG/AGTCC	1				1
AGGCC/CCTGG	1				1
CCGCG/CGCGG	1				1
AACCTC/AGGTTG	1				1
ACCATG/ATGGTC			1		1
ATCGGC/ATGCCG			1		1
