Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-9/megassr/results/hub_GCA_031277495.1/fasta/hub_GCA_031277495.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              328
Total size of examined sequences (bp):           3667802
Total number of identified SSRs:                 16
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
4	2
5	6
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AC	-	-	-	1		1
AGGA	-	1				1
TGAT	-		1			1
AACAT	1					1
ATTTT	1					1
CAAAA	1					1
GTGGG	1					1
TAAAA	1					1
TTATT	1					1
ATAAAA	1					1
ATTTTC	1					1
CTGGTG	1					1
GTTGGC					1	1
TAAAAA	1					1
TGTTGG	1					1
TTCAAA			1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AC/GT	-	-	-	1		1
AAGG/CCTT	-	1				1
AATC/ATTG	-		1			1
AAAAC/GTTTT	1					1
AAAAT/ATTTT	3					3
AACAT/ATGTT	1					1
ACCCC/GGGGT	1					1
AAAAAT/ATTTTT	2					2
AAAATG/ATTTTC	1					1
AAATTC/AATTTG			1			1
AACACC/GGTGTT	1					1
AACGCC/CGTTGG					1	1
ACCAGC/CTGGTG	1					1
