Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-13/megassr/results/hub_GCA_031273265.1/fasta/hub_GCA_031273265.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              136
Total size of examined sequences (bp):           2012652
Total number of identified SSRs:                 16
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	1
3	3
4	1
5	7
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
TA	-	-	-	1															1
CCG	-	-	1																1
CGC	-	-	1																1
CGG	-	-	1																1
GGAA	-	1																	1
AAAAC	1																		1
AAGAA	1																		1
CCCCT	1																		1
CGCCG	1																		1
CTTCG	1																		1
GGGAG	1																		1
GTACA	1																		1
CTTTTT	1																		1
TTCAAC	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AT/AT	-	-	-	1															1
CCG/CGG	-	-	3																3
AAGG/CCTT	-	1																	1
AAAAC/GTTTT	1																		1
AAAAG/CTTTT	1																		1
AAGCG/CGCTT	1																		1
ACAGT/ACTGT	1																		1
AGGGG/CCCCT	2																		2
CCGCG/CGCGG	1																		1
AAAAAG/CTTTTT	1																		1
AACTTC/AAGTTG	1																		1
