Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-12/megassr/results/hub_GCA_031273235.1/fasta/hub_GCA_031273235.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              142
Total size of examined sequences (bp):           2011257
Total number of identified SSRs:                 19
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	7
4	3
5	3
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	1								1
TC	-	-	-								1	1
CCG	-	-	1									1
CGC	-	-	1									1
GAA	-	-	1									1
GCC	-	-	2									2
GCG	-	-	1									1
GGC	-	-	1									1
ATTT	-	1										1
CTTG	-	1										1
CTTT	-	1										1
AGTAA	1											1
TAAAA	1											1
TCCTT	1											1
AGCAAC	1											1
ATGACC	1											1
GGCTCC	1											1
TGGTCA	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AG/CT	-	-	-								1	1
CG/CG	-	-	-	1								1
AAG/CTT	-	-	1									1
CCG/CGG	-	-	6									6
AAAG/CTTT	-	1										1
AAAT/ATTT	-	1										1
AAGC/CTTG	-	1										1
AAAAT/ATTTT	1											1
AAAGG/CCTTT	1											1
AAAGT/ACTTT	1											1
AACAGC/CTGTTG	1											1
ACCATG/ATGGTC	2											2
AGCCGG/CCGGCT	1											1
