Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-11/megassr/results/hub_GCA_031273185.1/fasta/hub_GCA_031273185.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              170
Total size of examined sequences (bp):           1450739
Total number of identified SSRs:                 29
Number of SSR containing sequences:              24
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	2
3	12
4	1
5	6
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
GC	-	-	-	1																1
TC	-	-	-		1															1
CAA	-	-	1																	1
CCG	-	-	1	1																2
CGC	-	-	1	2																3
CGG	-	-	2																	2
GCG	-	-	2																	2
GGC	-	-	1																	1
TCG	-	-	1																	1
CCTT	-	1																		1
ATTTT	1																			1
CCCTT	1																			1
CCGCG	1																			1
CGCCG	1																			1
GGCCC	1																			1
GGCGG	1																			1
AACGGT	1																			1
CGCTGG	1																			1
GACATC	1																			1
GGAAAA	1																			1
TCATGG		1																		1
TTGCTG		1																		1
TTTTCC	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
AG/CT	-	-	-		1															1
CG/CG	-	-	-	1																1
AAC/GTT	-	-	1																	1
ACG/CGT	-	-	1																	1
CCG/CGG	-	-	7	3																10
AAGG/CCTT	-	1																		1
AAAAT/ATTTT	1																			1
AAGGG/CCCTT	1																			1
CCCCG/CGGGG	1																			1
CCCGG/CCGGG	1																			1
CCGCG/CGCGG	2																			2
AAAAGG/CCTTTT	2																			2
AACAGC/CTGTTG		1																		1
AACGGT/ACCGTT	1																			1
ACATCG/ATGTCG	1																			1
ACCATG/ATGGTC		1																		1
AGCGCC/CGCTGG	1																			1
