Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-10/megassr/results/hub_GCA_031273165.1/fasta/hub_GCA_031273165.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              252
Total size of examined sequences (bp):           2633584
Total number of identified SSRs:                 34
Number of SSR containing sequences:              32
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	18
4	1
5	2
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
AG	-	-	-														1	1
CT	-	-	-							1								1
GA	-	-	-													1		1
ATG	-	-	1															1
CAC	-	-	1															1
CCG	-	-	2															2
CGC	-	-	2															2
CGG	-	-	4															4
GCC	-	-	2															2
GCG	-	-	1															1
GGC	-	-	5															5
AGGC	-						1											1
GTGAA	1																	1
TGTGC	1																	1
AGGCGC	1																	1
CCCCAG	1																	1
CCGCCA	1																	1
CTCCGG	1																	1
GAAGGC	1																	1
GAGCCG	1																	1
GAGGAA	1																	1
GCCGCT	1																	1
GCCTCG	1																	1
GGGATC	1																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
AG/CT	-	-	-							1						1	1	3
ACC/GGT	-	-	1															1
ATC/ATG	-	-	1															1
CCG/CGG	-	-	16															16
AGGC/CCTG	-						1											1
AAGTG/ACTTC	1																	1
ACAGC/CTGTG	1																	1
AAGAGG/CCTCTT	1																	1
AAGGCG/CCTTCG	1																	1
ACCGCC/CGGTGG	1																	1
AGCCCC/CTGGGG	1																	1
AGCCGG/CCGGCT	2																	2
AGCGGC/CCGCTG	1																	1
AGGCCG/CCTCGG	1																	1
AGGCGC/CCTGCG	1																	1
ATCCCG/ATCGGG	1																	1
