Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-9/megassr/results/hub_GCA_031273085.1/fasta/hub_GCA_031273085.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              200
Total size of examined sequences (bp):           2393450
Total number of identified SSRs:                 14
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	5
3	1
5	5
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1
CG	-	-	-	1																		1
GA	-	-	-											1								1
GC	-	-	-	1																		1
TC	-	-	-								1		1									2
TAT	-	-		1																		1
AAGAC		1																				1
CAGGG	1																					1
CCGCG	1																					1
CTGAT	1																					1
GGCGC	1																					1
AAGAAA	1																					1
GGCGGA	1																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1
AG/CT	-	-	-								1		1	1								3
CG/CG	-	-	-	2																		2
AAT/ATT	-	-		1																		1
AAGAC/CTTGT		1																				1
AGATC/ATCTG	1																					1
AGGGC/CCCTG	1																					1
CCGCG/CGCGG	2																					2
AAAAAG/CTTTTT	1																					1
AGGCGG/CCGCCT	1																					1
