Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-48/megassr/results/hub_GCA_031267115.1/fasta/hub_GCA_031267115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              375
Total size of examined sequences (bp):           2680816
Total number of identified SSRs:                 45
Number of SSR containing sequences:              39
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	3
3	9
4	5
5	16
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1																																																	1
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1																																																				1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1		1																																															1	3
CT	-	-	-													1						1																																																2
GA	-	-	-										1																																																									1
AGG	-	-	1																																																																			1
CGG	-	-		1																																																																		1
GCC	-	-	2																																																																			2
GCG	-	-	2																																																																			2
GGC	-	-	3																																																																			3
AGCA	-														1																																																							1
CCGC	-	1																																																																				1
CTTC	-	1																																																																				1
GCCT	-	1																																																																				1
TGCT	-								1																																																													1
AGGGG	1																																																																					1
CCGCG	1																																																																					1
CGCGG	1																																																																					1
CGGAG	1																																																																					1
CGGGC	1																																																																					1
GCCCG	2																																																																					2
GCCGC	1																																																																					1
GCGCC	1																																																																					1
GCGGG	1																																																																					1
GCTCC	1																																																																					1
GGCCG	1																																																																					1
GGGCC	1																																																																					1
TCGAA	1																																																																					1
TTCGA	1																																																																					1
TTTAA	1																																																																					1
AGGGCC	1																																																																					1
CCGCCT	1																																																																					1
GGCCAG	1																																																																					1
GGCGCG	1																																																																					1
TGGCCC	1																																																																					1
TTTGCC	1																																																																					1
TTTTCC	1																																																																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1																																																	1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1		1																																															1	4
AG/CT	-	-	-										1			1						1																																																3
AGG/CCT	-	-	1																																																																			1
CCG/CGG	-	-	7	1																																																																		8
AAGC/CTTG	-								1						1																																																							2
AAGG/CCTT	-	1																																																																				1
AGGC/CCTG	-	1																																																																				1
CCCG/CGGG	-	1																																																																				1
AAATT/AATTT	1																																																																					1
AATCG/ATTCG	2																																																																					2
AGCGG/CCGCT	2																																																																					2
AGGGG/CCCCT	1																																																																					1
CCCCG/CGGGG	1																																																																					1
CCCGG/CCGGG	5																																																																					5
CCGCG/CGCGG	4																																																																					4
AAAAGG/CCTTTT	1																																																																					1
AAAGGC/CCTTTG	1																																																																					1
AGGCGG/CCGCCT	1																																																																					1
AGGGCC/CCCTGG	3																																																																					3
CCCGCG/CGCGGG	1																																																																					1
