Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-47/megassr/results/hub_GCA_031266875.1/fasta/hub_GCA_031266875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              112
Total size of examined sequences (bp):           2602108
Total number of identified SSRs:                 28
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	6
2	1
3	1
4	5
5	9
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1	1																																																														3
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1																																																														2	3
AT	-	-	-	1																																																																															1
TCT	-	-	1																																																																																1
CGCA	-														1																																																																				1
GCAC	-																										2																																																								2
GCGT	-											1																																																																							1
TGCC	-	1																																																																																	1
AAGCC				1																																																																															1
AGCAA	1																																																																																		1
CGGCG		1																																																																																	1
GCCGC	1																																																																																		1
GCGCC	1																																																																																		1
GGCGC	1																																																																																		1
GGCTG	1																																																																																		1
TCGCC	1																																																																																		1
TTTCT	1																																																																																		1
CCAGAG	1																																																																																		1
CCTGAG	1																																																																																		1
CGCGCC	1																																																																																		1
CTGGCA				1																																																																															1
GCAACA	1																																																																																		1
GTGGAG		1																																																																																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		2	1																																																													2	6
AT/AT	-	-	-	1																																																																															1
AAG/CTT	-	-	1																																																																																1
ACGC/CGTG	-											1			1												2																																																								4
AGGC/CCTG	-	1																																																																																	1
AAAAG/CTTTT	1																																																																																		1
AAAGC/CTTTG	1																																																																																		1
AAGCC/CTTGG				1																																																																															1
AGCCC/CTGGG	1																																																																																		1
AGGCG/CCTCG	1																																																																																		1
CCGCG/CGCGG	3	1																																																																																	4
AACAGC/CTGTTG	1																																																																																		1
ACCTCC/AGGTGG		1																																																																																	1
ACTGGC/AGTGCC				1																																																																															1
AGAGCC/CTCTGG	1																																																																																		1
AGCCTG/AGGCTC	1																																																																																		1
CCCGCG/CGCGGG	1																																																																																		1
