Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-46/megassr/results/hub_GCA_031266775.1/fasta/hub_GCA_031266775.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              108
Total size of examined sequences (bp):           3098712
Total number of identified SSRs:                 72
Number of SSR containing sequences:              41
Number of sequences containing more than 1 SSR:  15
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	14
2	14
3	23
5	12
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1			1		1																													1																																															1	7
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	1							1																			1							1																																			1													7
AC	-	-	-		1																																																																																																1
AG	-	-	-																			1																																																																															1
CA	-	-	-							1										1				1																																																																													3
CT	-	-	-										1		1			2	1																																																																																		5
GA	-	-	-										1																																																																																								1
GC	-	-	-	1																																																																																																	1
TA	-	-	-	1																																																																																																	1
TG	-	-	-																		1																																																																																1
CGC	-	-	3	1																																																																																																	4
CGG	-	-	2																																																																																																		2
GCG	-	-	7	1	2																																																																																																10
GGA	-	-	1																																																																																																		1
GGC	-	-	5	1																																																																																																	6
ATCCG	1																																																																																																				1
CATAC	1																																																																																																				1
CCCTT	1																																																																																																				1
CCGCC	1																																																																																																				1
CCGGG	1																																																																																																				1
CGCCG	1																																																																																																				1
CGCGC	1																																																																																																				1
CGCGG	1																																																																																																				1
GAAAG	1																																																																																																				1
GCGCG	1																																																																																																				1
GCGGC	1																																																																																																				1
GGGCC	1																																																																																																				1
AAGAAA	1																																																																																																				1
AGGAGA	1																																																																																																				1
CCCTTC	1																																																																																																				1
CCGTTA	1																																																																																																				1
CGCGGC	1																																																																																																				1
CGCGGG	2																																																																																																				2
GGTTCA	1																																																																																																				1
TTTTCA	1																																																																																																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	2	1		1		1			1																			1							2																																			1												1	14
AC/GT	-	-	-		1					1										1	1			1																																																																													5
AG/CT	-	-	-										2		1			2	1			1																																																																															7
AT/AT	-	-	-	1																																																																																																	1
CG/CG	-	-	-	1																																																																																																	1
AGG/CCT	-	-	1																																																																																																		1
CCG/CGG	-	-	17	3	2																																																																																																22
AAAGG/CCTTT	1																																																																																																				1
AAGGG/CCCTT	1																																																																																																				1
ACCAT/ATGGT	1																																																																																																				1
ATCCG/ATCGG	1																																																																																																				1
CCCCG/CGGGG	1																																																																																																				1
CCCGG/CCGGG	2																																																																																																				2
CCGCG/CGCGG	5																																																																																																				5
AAAAAG/CTTTTT	1																																																																																																				1
AAAATG/ATTTTC	1																																																																																																				1
AACCTG/AGGTTC	1																																																																																																				1
AACGGT/ACCGTT	1																																																																																																				1
AAGGAG/CCTTCT	1																																																																																																				1
AAGGGG/CCCCTT	1																																																																																																				1
CCCGCG/CGCGGG	2																																																																																																				2
CCGCGG/CCGCGG	1																																																																																																				1
