Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-45/megassr/results/hub_GCA_031266695.1/fasta/hub_GCA_031266695.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              369
Total size of examined sequences (bp):           1920819
Total number of identified SSRs:                 34
Number of SSR containing sequences:              33
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	10
4	2
5	14
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CGC	-	-	1		1
CGG	-	-	1	1	2
GAA	-	-	1		1
GCC	-	-	4		4
GCG	-	-	1		1
GGC	-	-	1		1
CGGC	-	1			1
GCCG	-	1			1
AAGGC	1				1
CCGCC	1				1
CGCCC	1				1
CGCCG	2				2
CGCGC	1				1
CGCGG	1				1
CTTTT	1				1
GCCCG	1				1
GCGCC	3				3
GGGGA	1				1
TCCTT	1				1
ACGAAG	1				1
AGGAAA	1				1
CATCTG	1				1
GGAACG	1				1
GGCACG		1			1
GGCTTC	1				1
GGGCCG	1				1
TTTCTT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AAG/CTT	-	-	1		1
CCG/CGG	-	-	8	1	9
CCGG/CCGG	-	2			2
AAAAG/CTTTT	1				1
AAAGG/CCTTT	1				1
AAGGC/CCTTG	1				1
AGGGG/CCCCT	1				1
CCCCG/CGGGG	2				2
CCCGG/CCGGG	1				1
CCGCG/CGCGG	7				7
AAAAAG/CTTTTT	1				1
AAAAGG/CCTTTT	1				1
AACGGG/CCCGTT	1				1
AAGACG/CGTCTT	1				1
AAGCCG/CGGCTT	1				1
ACGGGC/CCCGTG		1			1
AGATGC/ATCTGC	1				1
CCCCGG/CCGGGG	1				1
