Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-44/megassr/results/hub_GCA_031266635.1/fasta/hub_GCA_031266635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              271
Total size of examined sequences (bp):           2307387
Total number of identified SSRs:                 41
Number of SSR containing sequences:              39
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	8
3	12
5	8
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																			1																																																																					1	2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2																																																																	1																						3
AG	-	-	-										1																																																																																													1
CT	-	-	-	1										1	1							1					1																																																																															5
GA	-	-	-													1															1																																																																											2
CAC	-	-	1																																																																																																							1
CCG	-	-	1																																																																																																							1
CGC	-	-	1																																																																																																							1
CGG	-	-		1																																																																																																						1
GAC	-	-	1																																																																																																							1
GCC	-	-	3		1																																																																																																					4
GCG	-	-	1																																																																																																							1
GGC	-	-	2																																																																																																							2
AAACA	1																																																																																																									1
ACGGT	1																																																																																																									1
CCGGA	1																																																																																																									1
CCGGC	1																																																																																																									1
CGGTA	1																																																																																																									1
GCCGG	1																																																																																																									1
GGCCG	2																																																																																																									2
AAGAAA	1																																																																																																									1
ATCAAG		1																																																																																																								1
CATCGT	1																																																																																																									1
CCTGCC	1																																																																																																									1
CGATGC	1																																																																																																									1
CTGGCC	1																																																																																																									1
GGCGCA		1																																																																																																								1
TGACGA	1																																																																																																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2																	1																																																1																					1	5
AG/CT	-	-	-	1									1	1	1	1						1					1				1																																																																											8
ACC/GGT	-	-	1																																																																																																							1
ACG/CGT	-	-	1																																																																																																							1
CCG/CGG	-	-	8	1	1																																																																																																					10
AAAAC/GTTTT	1																																																																																																									1
ACCGG/CCGGT	1																																																																																																									1
ACCGT/ACGGT	2																																																																																																									2
CCCGG/CCGGG	4																																																																																																									4
AAAAAG/CTTTTT	1																																																																																																									1
AAGATC/ATCTTG		1																																																																																																								1
ACGATG/ATCGTC	2																																																																																																									2
AGGCGC/CCTGCG		1																																																																																																								1
AGGGCC/CCCTGG	1																																																																																																									1
AGGGGC/CCCCTG	1																																																																																																									1
ATCGGC/ATGCCG	1																																																																																																									1
