Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-43/megassr/results/hub_GCA_031266255.1/fasta/hub_GCA_031266255.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              213
Total size of examined sequences (bp):           2291954
Total number of identified SSRs:                 30
Number of SSR containing sequences:              26
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	21
2	1
3	2
5	4
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	1	2	1		1			1	1															1																																																																								10
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2		2				2							1				1		1																			1																																																										1	11
GC	-	-	-	1																																																																																																															1
CTG	-	-	1																																																																																																																1
TAG	-	-	1																																																																																																																1
CTTTC	1																																																																																																																		1
GCCAA	1																																																																																																																		1
TACAA	1																																																																																																																		1
TGAGT	1																																																																																																																		1
CAATAC	1																																																																																																																		1
TAGGAG	1																																																																																																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	1	3	2	1		3			1	1			1				1		1						1													1																																																										1	21
CG/CG	-	-	-	1																																																																																																															1
ACT/AGT	-	-	1																																																																																																																1
AGC/CTG	-	-	1																																																																																																																1
AAAGG/CCTTT	1																																																																																																																		1
AACTC/AGTTG	1																																																																																																																		1
AAGCC/CTTGG	1																																																																																																																		1
AATAC/ATTGT	1																																																																																																																		1
AATACC/ATTGGT	1																																																																																																																		1
ACTCCT/AGGAGT	1																																																																																																																		1
