Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-42/megassr/results/hub_GCA_031266175.1/fasta/hub_GCA_031266175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              160
Total size of examined sequences (bp):           2577046
Total number of identified SSRs:                 37
Number of SSR containing sequences:              34
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	7
2	4
3	9
5	11
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1			2																																								1	4
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	1																																											3
AT	-	-	-	1																																																											1
GT	-	-	-																					1																																							1
TG	-	-	-		1																	1																																									2
CCG	-	-	2																																																												2
CGC	-	-	1																																																												1
CGG	-	-	1																																																												1
GCC	-	-	2																																																												2
GCG	-	-	1	1																																																											2
GGC	-	-	1																																																												1
CCAAG								1										1																																													2
CCGTT	2																																																														2
CGCCG	1																																																														1
CGGAC	1																																																														1
GCCCG	1																																																														1
GGACC	1																																																														1
GGGGA	1																																																														1
TAAAC	1																																																														1
TCCCC	1																																																														1
CAGGGC	1																																																														1
GCCCAG	1																																																														1
GGCCTG	1																																																														1
GGGGGT	1																																																														1
TCGCCG	1																																																														1
TGTCCT	1																																																														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	2	1		2																																								1	7
AC/GT	-	-	-		1																	1		1																																							3
AT/AT	-	-	-	1																																																											1
CCG/CGG	-	-	8	1																																																											9
AAACT/AGTTT	1																																																														1
AACGG/CCGTT	2																																																														2
AAGCC/CTTGG								1										1																																													2
ACCGG/CCGGT	2																																																														2
AGGGG/CCCCT	2																																																														2
CCCGG/CCGGG	1																																																														1
CCGCG/CGCGG	1																																																														1
AAGGAC/CCTTGT	1																																																														1
ACCCCC/GGGGGT	1																																																														1
ACGGCG/CCGTCG	1																																																														1
AGGCCC/CCTGGG	2																																																														2
AGGGCC/CCCTGG	1																																																														1
