Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-40/megassr/results/hub_GCA_031266075.1/fasta/hub_GCA_031266075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              116
Total size of examined sequences (bp):           1966468
Total number of identified SSRs:                 55
Number of SSR containing sequences:              36
Number of sequences containing more than 1 SSR:  14
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	6
2	5
3	20
5	13
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3							1																																																																																		1	5
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-												1																																																																															1
AG	-	-	-																															1																																																																										1
CT	-	-	-																														2																																																																											2
GA	-	-	-																						1	1																																																																																		2
AGC	-	-	1																																																																																																									1
CCG	-	-		1																																																																																																								1
CGC	-	-	5	1																																																																																																								6
CGG	-	-	3																																																																																																									3
GCC	-	-	3																																																																																																									3
GCG	-	-	2																																																																																																									2
GGC	-	-	3		1																																																																																																							4
AGGGG	1																																																																																																											1
ATAAT		1																																																																																																										1
CCGGC	1																																																																																																											1
GCCCC	1																																																																																																											1
GCCGG	1	1																																																																																																										2
GCGGC	1																																																																																																											1
GCTTC	1																																																																																																											1
GGCCG	1																																																																																																											1
GGCGG	1																																																																																																											1
GGGCC	2																																																																																																											2
GGTTT	1																																																																																																											1
ATCAAG	1																																																																																																											1
CAAGAT		1																																																																																																										1
CAGAAT	1																																																																																																											1
CAGGGG	1																																																																																																											1
CCGGCT	1																																																																																																											1
CTTCCT	1																																																																																																											1
GACATT	1																																																																																																											1
GCTGAC	1																																																																																																											1
GGGCCA	1																																																																																																											1
GGTTTT	1																																																																																																											1
TTTCTT	1																																																																																																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3							1				1																																																																														1	6
AG/CT	-	-	-																						1	1							2	1																																																																										5
AGC/CTG	-	-	1																																																																																																									1
CCG/CGG	-	-	16	2	1																																																																																																							19
AAACC/GGTTT	1																																																																																																											1
AAGCG/CGCTT	1																																																																																																											1
AATAT/ATATT		1																																																																																																										1
AGGGG/CCCCT	1																																																																																																											1
CCCCG/CGGGG	2																																																																																																											2
CCCGG/CCGGG	5	1																																																																																																										6
CCGCG/CGCGG	1																																																																																																											1
AAAAAG/CTTTTT	1																																																																																																											1
AAAACC/GGTTTT	1																																																																																																											1
AAGAGG/CCTCTT	1																																																																																																											1
AAGATC/ATCTTG	1	1																																																																																																										2
AATCAG/ATTCTG	1																																																																																																											1
AATGTC/ACATTG	1																																																																																																											1
ACGCTG/AGCGTC	1																																																																																																											1
AGCCGG/CCGGCT	1																																																																																																											1
AGGGCC/CCCTGG	1																																																																																																											1
AGGGGC/CCCCTG	1																																																																																																											1
