Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-15/megassr/results/hub_GCA_031265905.1/fasta/hub_GCA_031265905.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              383
Total size of examined sequences (bp):           2897134
Total number of identified SSRs:                 60
Number of SSR containing sequences:              51
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	24
2	3
3	10
4	4
5	12
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	1	1	1	2							1			1								1																		1						12
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		4		1		1	1		1											1																				1					1	1	12
AG	-	-	-	1																																																												1
AT	-	-	-	1																																																												1
TG	-	-	-	1																																																												1
CCG	-	-	3																																																													3
CGC	-	-		1																																																												1
CGG	-	-	2																																																													2
GCC	-	-	1																																																													1
GCG	-	-	1																																																													1
GGC	-	-	2																																																													2
AAAG	-	1																																																														1
CAAG	-																				1																																											1
CGGG	-		1																																																													1
TTGC	-																					1																																										1
CCGGG	1																																																															1
CGGAG	1																																																															1
CTCCC	1																																																															1
GCCCG	1																																																															1
GCCGC	1																																																															1
GCGGC	1																																																															1
GGAAC	1																																																															1
GGGGA	3																																																															3
GGGGC	1																																																															1
TCCGG	1																																																															1
AACGGC	1																																																															1
CCAGAA			1																																																													1
CCAGGG	1																																																															1
GAAGAG				1																																																												1
GCGGTG	1																																																															1
GGCATT		1																																																														1
TTGGGG	1																																																															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	5	1	2	2	1	1		1			1			1					1			1																	1	1				1	1	24
AC/GT	-	-	-	1																																																												1
AG/CT	-	-	-	1																																																												1
AT/AT	-	-	-	1																																																												1
CCG/CGG	-	-	9	1																																																												10
AAAG/CTTT	-	1																																																														1
AAGC/CTTG	-																				1	1																																										2
CCCG/CGGG	-		1																																																													1
AACGG/CCGTT	1																																																															1
ACCGG/CCGGT	1																																																															1
AGCGG/CCGCT	1																																																															1
AGGGG/CCCCT	4																																																															4
CCCCG/CGGGG	1																																																															1
CCCGG/CCGGG	2																																																															2
CCGCG/CGCGG	2																																																															2
AACCAG/CTGGTT			1																																																													1
AACCCC/GGGGTT	1																																																															1
AACGGC/CCGTTG	1																																																															1
AAGAGG/CCTCTT				1																																																												1
AATGCC/ATTGGC		1																																																														1
ACCGCC/CGGTGG	1																																																															1
AGGGCC/CCCTGG	1																																																															1
