Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-13/megassr/results/hub_GCA_031265825.1/fasta/hub_GCA_031265825.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              117
Total size of examined sequences (bp):           1809209
Total number of identified SSRs:                 10
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	3
4	1
5	3
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-								1																																																																							1	2
GA	-	-	-	1																																																																																													1
GT	-	-	-	2																																																																																													2
ATGA	-	1																																																																																															1
CAGAA	1																																																																																																1
GGGAG	1																																																																																																1
TTCGT	1																																																																																																1
CAGTAT	1																																																																																																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-								1																																																																							1	2
AC/GT	-	-	-	2																																																																																													2
AG/CT	-	-	-	1																																																																																													1
AATG/ATTC	-	1																																																																																															1
AAACG/CGTTT	1																																																																																																1
AACAG/CTGTT	1																																																																																																1
AGGGG/CCCCT	1																																																																																																1
ACTGAT/AGTATC	1																																																																																																1
