Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-12/megassr/results/hub_GCA_031265435.1/fasta/hub_GCA_031265435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              206
Total size of examined sequences (bp):           3672429
Total number of identified SSRs:                 50
Number of SSR containing sequences:              39
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	30
2	3
3	8
4	1
5	4
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1			1													1					1																								1						1	6
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	1	2	4	3		1			1					1				2										1			1													1									1	24
CG	-	-	-	1																																																																				1
CT	-	-	-																1																																																					1
GA	-	-	-	1																																																																				1
ATC	-	-	1																																																																					1
CGC	-	-	2																																																																					2
CGG	-	-		1																																																																				1
GAA	-	-		1																																																																				1
GCC	-	-	1																																																																					1
GGC	-	-	1																																																																					1
TCA	-	-	1																																																																					1
CAAG	-																			1																																																				1
AAAAG	1																																																																							1
AGAAA	1																																																																							1
ATAAT	1																																																																							1
GGCGG	1																																																																							1
ATCAAG	1																																																																							1
CAGCAT	1																																																																							1
GAAGCT	1																																																																							1
GGCGGG	1																																																																							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	1	3	4	3	1	1			1					1				3					1					1			1													1			1						2	30
AG/CT	-	-	-	1															1																																																					2
CG/CG	-	-	-	1																																																																				1
AAG/CTT	-	-		1																																																																				1
ATC/ATG	-	-	2																																																																					2
CCG/CGG	-	-	4	1																																																																				5
AAGC/CTTG	-																			1																																																				1
AAAAG/CTTTT	2																																																																							2
AATAT/ATATT	1																																																																							1
CCCCG/CGGGG	1																																																																							1
AAGATC/ATCTTG	1																																																																							1
AAGCTG/AGCTTC	1																																																																							1
AGCATC/ATGCTG	1																																																																							1
CCCCCG/CGGGGG	1																																																																							1
