Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-10/megassr/results/hub_GCA_031264395.1/fasta/hub_GCA_031264395.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              354
Total size of examined sequences (bp):           2906245
Total number of identified SSRs:                 39
Number of SSR containing sequences:              36
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	20
5	6
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
AC	-	-	-	1																												1
AG	-	-	-														1														1	2
CA	-	-	-																		1											1
CT	-	-	-																2	1												3
GC	-	-	-	1																												1
AGG	-	-	1																													1
CCG	-	-	2																													2
CGC	-	-	4	3																												7
CGG	-	-	2																													2
GCG	-	-	6																													6
GGC	-	-	2																													2
CATAC	1																															1
CCGCC	1																															1
CCGCG	1																															1
CTTTC	1																															1
GGCCC	1																															1
GGCCG	1																															1
AAGAAA	1																															1
CCCGCG	1																															1
CGCGGA	1																															1
CTGGAA		1																														1
GCGGCC	1																															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
AC/GT	-	-	-	1																	1											2
AG/CT	-	-	-														1		2	1											1	5
CG/CG	-	-	-	1																												1
AGG/CCT	-	-	1																													1
CCG/CGG	-	-	16	3																												19
AAAGG/CCTTT	1																															1
ACCAT/ATGGT	1																															1
CCCCG/CGGGG	1																															1
CCCGG/CCGGG	2																															2
CCGCG/CGCGG	1																															1
AAAAAG/CTTTTT	1																															1
AACTGG/AGTTCC		1																														1
ACGCGG/CCGCGT	1																															1
CCCGCG/CGCGGG	1																															1
CCGCGG/CCGCGG	1																															1
