Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-9/megassr/results/hub_GCA_031264315.1/fasta/hub_GCA_031264315.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              412
Total size of examined sequences (bp):           1938618
Total number of identified SSRs:                 42
Number of SSR containing sequences:              41
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	3
3	8
5	19
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																	1	1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1															1
AG	-	-	-								1																								1
CT	-	-	-										1																						1
GA	-	-	-						1																										1
CCG	-	-	1																																1
CGC	-	-	1																																1
GCG	-	-	1																																1
GGC	-	-	4																																4
TCA	-	-	1																																1
AAGAG	1																																		1
ATTTG	1																																		1
CCAAA	1																																		1
CCCCG	1																																		1
CCCGG	1																																		1
CCGAA	1																																		1
CCGCG	1																																		1
CCGGG	1																																		1
CGGAG	1																																		1
CGGGC	2																																		2
GACAG	1																																		1
GCCGC	1																																		1
GCTCC	3																																		3
GGGCC	1																																		1
TCCGG	1																																		1
TTCGA	1																																		1
CCGGGA		1																																	1
CCTGGA	1																																		1
CCTGTT	1																																		1
CGGTCG	1																																		1
GCCTCT	1																																		1
GGGCGG	1																																		1
TCGTGT	1																																		1
TGTTTC	1																																		1
TTCTTG	1																																		1
TTTTCC	1																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1														1	2
AG/CT	-	-	-						1		1		1																						3
ATC/ATG	-	-	1																																1
CCG/CGG	-	-	7																																7
AAACC/GGTTT	1																																		1
AAATC/ATTTG	1																																		1
AACCG/CGGTT	1																																		1
AAGAG/CTCTT	1																																		1
AATCG/ATTCG	1																																		1
ACAGG/CCTGT	1																																		1
ACCGG/CCGGT	1																																		1
AGCGG/CCGCT	4																																		4
CCCCG/CGGGG	1																																		1
CCCGG/CCGGG	5																																		5
CCGCG/CGCGG	2																																		2
AAAAGG/CCTTTT	1																																		1
AAACAG/CTGTTT	1																																		1
AACAAG/CTTGTT	1																																		1
AACACG/CGTGTT	1																																		1
AACAGG/CCTGTT	1																																		1
ACCGCG/CGCGGT	1																																		1
ACCGGG/CCCGGT		1																																	1
ACCTGG/AGGTCC	1																																		1
AGAGGC/CCTCTG	1																																		1
CCCCCG/CGGGGG	1																																		1
