Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-8/megassr/results/hub_GCA_031264115.1/fasta/hub_GCA_031264115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              388
Total size of examined sequences (bp):           2686742
Total number of identified SSRs:                 35
Number of SSR containing sequences:              32
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	7
2	2
3	5
5	17
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1						2		1					4
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1											1	3
AT	-	-	-	2																											2
CCG	-	-	1																												1
CGC	-	-	1																												1
CGG	-	-	1																												1
GCG	-	-	1																												1
TCC	-	-	1																												1
ACAAC								1																							1
AGGCG	2																														2
CATTG	1																														1
CCCGC	1																														1
CCGCG	2																														2
CGCCC	1																														1
CGCGC	1																														1
CGGAA	1																														1
CGGCG	1																														1
CGGGC	1																														1
CGGTA	1																														1
GCGAG	1																														1
GCGCC	1																														1
GTACG	1																														1
TCTTT	1																														1
AAAAGA		1																													1
GACGCG	1																														1
GGGGAC	1																														1
GTGAGC	1																														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1					2		1				1	7
AT/AT	-	-	-	2																											2
AGG/CCT	-	-	1																												1
CCG/CGG	-	-	4																												4
AAAAG/CTTTT	1																														1
AACAC/GTGTT								1																							1
AACGG/CCGTT	1																														1
AATGC/ATTGC	1																														1
ACCGT/ACGGT	2																														2
AGGCG/CCTCG	3																														3
CCCCG/CGGGG	2																														2
CCCGG/CCGGG	1																														1
CCGCG/CGCGG	5																														5
AAAAAG/CTTTTT		1																													1
ACGCGG/CCGCGT	1																														1
ACGCTC/AGCGTG	1																														1
ACGGGG/CCCCGT	1																														1
