Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-7/megassr/results/hub_GCA_031264055.1/fasta/hub_GCA_031264055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              308
Total size of examined sequences (bp):           2027520
Total number of identified SSRs:                 30
Number of SSR containing sequences:              27
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	6
2	5
3	6
5	7
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	1	1																																											1	5
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-											1																																					1
AC	-	-	-		1																																																												1
AT	-	-	-	1																																																													1
CT	-	-	-					1								1																																																	2
GA	-	-	-																1																																														1
CCG	-	-	1																																																														1
CCT	-	-		1																																																													1
CGG	-	-	1																																																														1
GCC	-	-	2																																																														2
GCG	-	-	1																																																														1
AGCGG	1																																																																1
CCCGC	1																																																																1
CCCGG	1																																																																1
CCGGC	1																																																																1
CGGCC	2	1																																																															3
CCAGGG	1																																																																1
CCGTAA	1																																																																1
CGATGC	1																																																																1
CGGAGG	1																																																																1
GGGCCA	1																																																																1
TTTCTT	1																																																																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	1	1							1																																				1	6
AC/GT	-	-	-		1																																																												1
AG/CT	-	-	-					1								1			1																																														3
AT/AT	-	-	-	1																																																													1
AGG/CCT	-	-		1																																																													1
CCG/CGG	-	-	5																																																														5
AGCGG/CCGCT	1																																																																1
CCCCG/CGGGG	1																																																																1
CCCGG/CCGGG	4	1																																																															5
AAAAAG/CTTTTT	1																																																																1
AACCGT/ACGGTT	1																																																																1
AGGCGG/CCGCCT	1																																																																1
AGGGCC/CCCTGG	2																																																																2
ATCGGC/ATGCCG	1																																																																1
