Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-6/megassr/results/hub_GCA_031263635.1/fasta/hub_GCA_031263635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              352
Total size of examined sequences (bp):           1808969
Total number of identified SSRs:                 36
Number of SSR containing sequences:              35
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	1
3	17
4	1
5	15
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																				1	1
AG	-	-	-																	1																		1
CCG	-	-	1																																			1
CGC	-	-	2	1																																		3
CGG	-	-	1	1																																		2
CTC	-	-	1																																			1
GCC	-	-	2																																			2
GCG	-	-	2	1	1																																	4
GGC	-	-	2		2																																	4
CCGG	-	1																																				1
CCCCT	1																																					1
CCCTC	1																																					1
CCGGC	1																																					1
CCGGG	1																																					1
CCTCC	1																																					1
CGGAG	2																																					2
CGGCC	1																																					1
GCCCG	1																																					1
GCCGG	1																																					1
GGAGG	1																																					1
GGCCC	1																																					1
GGGCC	1																																					1
GGGGA	1																																					1
TCCCC	1																																					1
CTCCCC	1																																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																				1	1
AG/CT	-	-	-																	1																		1
AGG/CCT	-	-	1																																			1
CCG/CGG	-	-	10	3	3																																	16
CCGG/CCGG	-	1																																				1
AGCGG/CCGCT	2																																					2
AGGGG/CCCCT	6																																					6
CCCGG/CCGGG	7																																					7
AGGGGG/CCCCCT	1																																					1
