Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-5/megassr/results/hub_GCA_031263435.1/fasta/hub_GCA_031263435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              300
Total size of examined sequences (bp):           1862057
Total number of identified SSRs:                 42
Number of SSR containing sequences:              38
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	10
2	2
3	4
4	1
5	18
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	1		1																											1																							6
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1						1		1																																												1	4
GA	-	-	-	1			1																																																																2
ATG	-	-	1																																																																				1
GAA	-	-	1																																																																				1
GGA	-	-	1																																																																				1
GGC	-	-	1																																																																				1
CCGG	-	1																																																																					1
CCCGC	1																																																																						1
CCGGA	1																																																																						1
CCGGC	1																																																																						1
CGCCG	1																																																																						1
CGGCC	1																																																																						1
CGGGC	3																																																																						3
CTGTC	1																																																																						1
CTTCC	1																																																																						1
GAACG	1																																																																						1
GCAGG	1																																																																						1
GCCCC	1																																																																						1
GCCGG	2																																																																						2
GCGGG	1																																																																						1
GGGCC	1																																																																						1
GGGGC	1																																																																						1
AGGAAA	1																																																																						1
CCTGAA		1																																																																					1
CGGGGG	1																																																																						1
CTTTGC	1																																																																						1
GGCAAA	1																																																																						1
GGCCGC	1																																																																						1
TCCCGG		1																																																																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	1		1			1		1																						1																						1	10
AG/CT	-	-	-	1			1																																																																2
AAG/CTT	-	-	1																																																																				1
AGG/CCT	-	-	1																																																																				1
ATC/ATG	-	-	1																																																																				1
CCG/CGG	-	-	1																																																																				1
CCGG/CCGG	-	1																																																																					1
AACGG/CCGTT	1																																																																						1
AAGGG/CCCTT	1																																																																						1
ACAGG/CCTGT	1																																																																						1
ACCGG/CCGGT	1																																																																						1
AGGGC/CCCTG	1																																																																						1
CCCCG/CGGGG	4																																																																						4
CCCGG/CCGGG	8																																																																						8
CCGCG/CGCGG	1																																																																						1
AAAAGG/CCTTTT	1																																																																						1
AAAGGC/CCTTTG	2																																																																						2
AACCTG/AGGTTC		1																																																																					1
ACCGGG/CCCGGT		1																																																																					1
CCCCCG/CGGGGG	1																																																																						1
CCGCGG/CCGCGG	1																																																																						1
