Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-4/megassr/results/hub_GCA_031263405.1/fasta/hub_GCA_031263405.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              265
Total size of examined sequences (bp):           2113650
Total number of identified SSRs:                 14
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	2
3	2
4	1
5	3
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1										1			1						1	4
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1																				1
AC	-	-	-				1																															1
AG	-	-	-																			1																1
TCG	-	-	1																																			1
TCT	-	-	1																																			1
CAAG	-										1																											1
AGAAA	1																																					1
CCTTA	1																																					1
GTGTT	1																																					1
GAAAAG	1																																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2										1			1						1	5
AC/GT	-	-	-				1																															1
AG/CT	-	-	-																			1																1
AAG/CTT	-	-	1																																			1
ACG/CGT	-	-	1																																			1
AAGC/CTTG	-										1																											1
AAAAG/CTTTT	1																																					1
AACAC/GTGTT	1																																					1
AAGGT/ACCTT	1																																					1
AAAAGG/CCTTTT	1																																					1
