Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-3/megassr/results/hub_GCA_031263265.1/fasta/hub_GCA_031263265.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              216
Total size of examined sequences (bp):           2450160
Total number of identified SSRs:                 24
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	16
2	1
3	3
5	2
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2												1																																		3
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	2	1	1	1		1	1																																1					1	1	13
AG	-	-	-																1																																													1
CCG	-	-	1																																																													1
CCT	-	-	1																																																													1
CTG	-	-	1																																																													1
AGGGC	1																																																															1
TATAC	1																																																															1
AAAAGT	1																																																															1
CAATAC	1																																																															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	2	1	1	1		1	1					1																											1					1	1	16
AG/CT	-	-	-																1																																													1
AGC/CTG	-	-	1																																																													1
AGG/CCT	-	-	1																																																													1
CCG/CGG	-	-	1																																																													1
ACTAT/AGTAT	1																																																															1
AGGGC/CCCTG	1																																																															1
AAAAGT/ACTTTT	1																																																															1
AATACC/ATTGGT	1																																																															1
