Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-2/megassr/results/hub_GCA_031263215.1/fasta/hub_GCA_031263215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              312
Total size of examined sequences (bp):           1900212
Total number of identified SSRs:                 29
Number of SSR containing sequences:              27
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	7
2	3
3	4
4	1
5	10
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1																																																																1	2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		2				1											1																																																		5
CT	-	-	-								1																																																																										1
GA	-	-	-															1		1																																																																	2
CCG	-	-		1																																																																																	1
CGC	-	-	1																																																																																		1
CGG	-	-	1																																																																																		1
GCG	-	-	1																																																																																		1
AAGG	-	1																																																																																			1
ACAGC																				1																																																																	1
CCCCG		1																																																																																			1
GCCGG	2																																																																																				2
GGCCC	1																																																																																				1
GGCCG	1																																																																																				1
GGCGC	1																																																																																				1
GGGCC	1	1																																																																																			2
TCTGC	1																																																																																				1
ACCGCC	1																																																																																				1
ATCCAG	1																																																																																				1
CCGGAA	1																																																																																				1
GTGGCG	1																																																																																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		3				1											1																																																	1	7
AG/CT	-	-	-								1							1		1																																																																	3
CCG/CGG	-	-	3	1																																																																																	4
AAGG/CCTT	-	1																																																																																			1
ACAGC/CTGTG																				1																																																																	1
AGAGC/CTCTG	1																																																																																				1
CCCCG/CGGGG		1																																																																																			1
CCCGG/CCGGG	5	1																																																																																			6
CCGCG/CGCGG	1																																																																																				1
AACCGG/CCGGTT	1																																																																																				1
ACCGCC/CGGTGG	2																																																																																				2
AGATCC/ATCTGG	1																																																																																				1
