Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-11/megassr/results/hub_GCA_031262445.1/fasta/hub_GCA_031262445.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              347
Total size of examined sequences (bp):           2028296
Total number of identified SSRs:                 4
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
5	3
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AAATT	1				1
ATAGT				1	1
CAACC	1				1
TGTTCG		1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AAATT/AATTT	1				1
AACCC/GGGTT	1				1
ACTAT/AGTAT				1	1
AACACG/CGTGTT		1			1
