Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-13/megassr/results/hub_GCA_031253595.1/fasta/hub_GCA_031253595.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              111
Total size of examined sequences (bp):           5575714
Total number of identified SSRs:                 43
Number of SSR containing sequences:              30
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	2
5	4
6	34

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
GC	-	-	-	1							1
CAC	-	-	1								1
CGC	-	-	1								1
GCCA	-	1									1
TGGC	-						1				1
CAGCC	1										1
CTGGG	1										1
GGCCG	1										1
GGCGC	1										1
AAAGCC									1		1
AAGCCC	1		2		1				1		5
ACCGCC					1						1
AGCACC	1										1
ATCCCG			1								1
ATGGCC	1										1
CAACAC	1										1
CAACGG	1	1		1							3
CAGGCC	1										1
CCAAGC				1							1
CCAGGC	1										1
CCCGCA	1										1
CCTTGA	1										1
CGCCAT	1										1
CGGCAA	1										1
GCAATG	1										1
GCCGTT	1										1
GCTTGG										1	1
GGCTTG			1								1
GGTGGC				1							1
TGGGCT			1								1
TTGCCG	3			1							4
TTGGGC	1				1		1				3

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	1							1
ACC/GGT	-	-	1								1
CCG/CGG	-	-	1								1
AGCC/CTGG	-	1					1				2
AGCCC/CTGGG	2										2
CCCGG/CCGGG	1										1
CCGCG/CGCGG	1										1
AAAGCC/CTTTGG									1		1
AACACC/GGTGTT	1										1
AACGGC/CCGTTG	6	1		2							9
AAGCCC/CTTGGG	2		4	1	2		1		1	1	12
AAGGTC/ACCTTG	1										1
AATGGC/ATTGCC	1										1
ACCAGC/CTGGTG	1										1
ACCCGC/CGGGTG	1										1
ACCGCC/CGGTGG				1	1						2
AGGCCC/CCTGGG	2										2
ATCCCG/ATCGGG			1								1
ATCGCC/ATGGCG	1										1
ATGGCC/ATGGCC	1										1
