Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_030849625.1/fasta/hub_GCA_030849625.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1165
Total size of examined sequences (bp):           25354336
Total number of identified SSRs:                 10566
Number of SSR containing sequences:              611
Number of sequences containing more than 1 SSR:  419
Number of SSRs present in compound formation:    1013


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	7561
3	1626
4	384
5	585
6	405

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	207	208	209	210	211	212	213	214	215	216	217	218	219	220	221	222	223	224	225	226	227	228	229	230	231	232	233	234	235	236	237	238	239	240	241	242	243	244	245	246	247	248	249	250	251	252	253	254	255	256	257	258	259	260	261	262	263	264	265	266	267	268	269	270	271	272	273	274	275	276	277	278	279	280	281	282	283	284	285	286	287	288	289	290	291	292	293	294	295	296	297	298	299	300	301	302	303	304	305	306	307	308	309	310	311	312	313	314	315	316	317	318	319	320	321	322	323	324	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																																																																																																																																																																																																																																																																																																																1
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1		1						1																																																																																																																																																																																																																																																																																																						3
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																																																																																																																																																																																																																																																																																																																1
AC	-	-	-	177	160	142	116	110	88	66	58	28	15	19	13	11	6	4	8	4	1	5	1		2	2						1						1	1																																																																																																																																																																																																																																																																																												1039
AG	-	-	-	228	201	158	88	31	16	5	3	2	1		1																																																																																																																																																																																																																																																																																																																				734
AT	-	-	-	24	11	11	5	2	2	1		3	1	1																																																																																																																																																																																																																																																																																																																					61
CA	-	-	-	269	192	149	140	125	95	84	62	48	44	20	16	10	6	5	6	1	4	2	1	1	2			1					1					1																																																																																																																																																																																																																																																																																												1	1286
CG	-	-	-	17	2																																																																																																																																																																																																																																																																																																																														19
CT	-	-	-	223	195	120	75	34	11	4	3	3	2	1																																																																																																																																																																																																																																																																																																																					671
GA	-	-	-	265	232	145	76	37	11	6	3	1	1	1																																																																																																																																																																																																																																																																																																																					778
GC	-	-	-	21	4																																																																																																																																																																																																																																																																																																																														25
GT	-	-	-	216	133	127	149	87	91	71	56	42	30	24	16	11	5	7	3	7	5	1	2			1				2											1																																																																																																																																																																																																																																																																																										1087
TA	-	-	-	10	3	5	3	2	3	2	2	1	1	2																																																																																																																																																																																																																																																																																																																					34
TC	-	-	-	194	133	105	65	22	12	5	8	3		2	1		1																																																																																																																																																																																																																																																																																																																		551
TG	-	-	-	250	215	162	179	139	81	67	45	33	29	26	11	10	6	5	4	2	1	1	1			1	3		1	1						1								1																																																																																																																																																																																																															1																																																																								1276
AAC	-	-	98	26	9	3	3	1																																																																																																																																																																																																																																																																																																																											140
AAG	-	-	29	1																																																																																																																																																																																																																																																																																																																															30
AAT	-	-	2		2																																																																																																																																																																																																																																																																																																																														4
ACA	-	-	36	11	3	4	2		1	1																																																																																																																																																																																																																																																																																																																									58
ACC	-	-	10	6	2	1																																																																																																																																																																																																																																																																																																																													19
ACG	-	-	15	7																																																																																																																																																																																																																																																																																																																															22
ACT	-	-	1																																																																																																																																																																																																																																																																																																																																1
AGA	-	-	11	6	1		1																																																																																																																																																																																																																																																																																																																												19
AGC	-	-	10	4	3			1																																																																																																																																																																																																																																																																																																																											18
AGG	-	-	2	1																																																																																																																																																																																																																																																																																																																															3
AGT	-	-	1	1	1																																																																																																																																																																																																																																																																																																																														3
ATA	-	-	3		1																																																																																																																																																																																																																																																																																																																														4
ATC	-	-	2		1																																																																																																																																																																																																																																																																																																																														3
ATG	-	-	1																																																																																																																																																																																																																																																																																																																																1
ATT	-	-	4	1		1	1																																																																																																																																																																																																																																																																																																																												7
CAA	-	-	68	9	10	4	1				1																																																																																																																																																																																																																																																																																																																								93
CAC	-	-	43	21	1																																																																																																																																																																																																																																																																																																																														65
CAG	-	-	9	5	4	1	2	1	1																																																																																																																																																																																																																																																																																																																										23
CAT	-	-	5		1																																																																																																																																																																																																																																																																																																																														6
CCA	-	-	31	16		2																																																																																																																																																																																																																																																																																																																													49
CCG	-	-	19	3	1																																																																																																																																																																																																																																																																																																																														23
CCT	-	-	11	1	1																																																																																																																																																																																																																																																																																																																														13
CGA	-	-	35	4	1	1																																																																																																																																																																																																																																																																																																																													41
CGC	-	-	20	11																																																																																																																																																																																																																																																																																																																															31
CGG	-	-	19	1																																																																																																																																																																																																																																																																																																																															20
CGT	-	-	31	4	4	1																																																																																																																																																																																																																																																																																																																													40
CTA	-	-	1	1																																																																																																																																																																																																																																																																																																																															2
CTC	-	-	11	3																																																																																																																																																																																																																																																																																																																															14
CTG	-	-	15	7	3	1	1																																																																																																																																																																																																																																																																																																																												27
CTT	-	-	23																																																																																																																																																																																																																																																																																																																																23
GAA	-	-	14	4																																																																																																																																																																																																																																																																																																																															18
GAC	-	-	20	8	1		1																																																																																																																																																																																																																																																																																																																												30
GAG	-	-	20	2	1																																																																																																																																																																																																																																																																																																																														23
GAT	-	-	12	1	1																																																																																																																																																																																																																																																																																																																														14
GCA	-	-	19	6	4		1																																																																																																																																																																																																																																																																																																																												30
GCC	-	-	23	7																																																																																																																																																																																																																																																																																																																															30
GCG	-	-	25	3	2																																																																																																																																																																																																																																																																																																																														30
GCT	-	-	16	13	2	2																																																																																																																																																																																																																																																																																																																													33
GGA	-	-	12				1																																																																																																																																																																																																																																																																																																																												13
GGC	-	-	28	5	1																																																																																																																																																																																																																																																																																																																														34
GGT	-	-	51	14	4																																																																																																																																																																																																																																																																																																																														69
GTA	-	-	1	2																																																																																																																																																																																																																																																																																																																															3
GTC	-	-	23	6	1																																																																																																																																																																																																																																																																																																																														30
GTG	-	-	42	20	5																																																																																																																																																																																																																																																																																																																														67
GTT	-	-	44	16	3																																																																																																																																																																																																																																																																																																																														63
TAA	-	-	1		1																																																																																																																																																																																																																																																																																																																														2
TAC	-	-	2	1																																																																																																																																																																																																																																																																																																																															3
TAG	-	-		1																																																																																																																																																																																																																																																																																																																															1
TAT	-	-	1	1	1	1																																																																																																																																																																																																																																																																																																																													4
TCA	-	-	6	1	1			1																																																																																																																																																																																																																																																																																																																											9
TCC	-	-	9		1																																																																																																																																																																																																																																																																																																																														10
TCG	-	-	22	8	6	1	1																																																																																																																																																																																																																																																																																																																												38
TCT	-	-	7																																																																																																																																																																																																																																																																																																																																7
TGA	-	-	2		1																																																																																																																																																																																																																																																																																																																														3
TGC	-	-	17	6	3	2																																																																																																																																																																																																																																																																																																																													28
TGG	-	-	14	6	2																																																																																																																																																																																																																																																																																																																														22
TGT	-	-	47	27	9		5		1																																																																																																																																																																																																																																																																																																																										89
TTA	-	-	1																																																																																																																																																																																																																																																																																																																																1
TTC	-	-	20	2	1																																																																																																																																																																																																																																																																																																																														23
TTG	-	-	59	23	11	3	1																																																																																																																																																																																																																																																																																																																												97
AAAC	-	28	6	2																																																																																																																																																																																																																																																																																																																															36
AAAG	-	11		1																																																																																																																																																																																																																																																																																																																															12
AAAT	-	5	1																																																																																																																																																																																																																																																																																																																																6
AACA	-	8	3	1																																																																																																																																																																																																																																																																																																																															12
AACC	-		1																																																																																																																																																																																																																																																																																																																																1
AAGA	-	4																																																																																																																																																																																																																																																																																																																																	4
AAGC	-	2																																																																																																																																																																																																																																																																																																																																	2
AATC	-	1																																																																																																																																																																																																																																																																																																																																	1
ACAA	-	12	2																																																																																																																																																																																																																																																																																																																																14
ACAG	-	1																																																																																																																																																																																																																																																																																																																																	1
ACAT	-	3																																																																																																																																																																																																																																																																																																																																	3
AGAA	-	6																																																																																																																																																																																																																																																																																																																																	6
AGAC	-	2	2																																																																																																																																																																																																																																																																																																																																4
AGAT	-	1		1																																																																																																																																																																																																																																																																																																																															2
AGTG	-	1																																																																																																																																																																																																																																																																																																																																	1
ATAC	-			1																																																																																																																																																																																																																																																																																																																															1
ATGA	-	3																																																																																																																																																																																																																																																																																																																																	3
ATGT	-	1		1																																																																																																																																																																																																																																																																																																																															2
ATTT	-	1																																																																																																																																																																																																																																																																																																																																	1
CAAA	-	26	5																																																																																																																																																																																																																																																																																																																																31
CAAC	-	3																																																																																																																																																																																																																																																																																																																																	3
CAAT	-	1																																																																																																																																																																																																																																																																																																																																	1
CACC	-	1																																																																																																																																																																																																																																																																																																																																	1
CACG	-	2	2																																																																																																																																																																																																																																																																																																																																4
CACT	-	4																																																																																																																																																																																																																																																																																																																																	4
CAGA	-	3	1																																																																																																																																																																																																																																																																																																																																4
CAGT	-		1																																																																																																																																																																																																																																																																																																																																1
CCAC	-	4																																																																																																																																																																																																																																																																																																																																	4
CCCA	-	2																																																																																																																																																																																																																																																																																																																																	2
CCCT	-	1																																																																																																																																																																																																																																																																																																																																	1
CCTC	-	1																																																																																																																																																																																																																																																																																																																																	1
CGAG	-		1	1																																																																																																																																																																																																																																																																																																																															2
CGCA	-	3																																																																																																																																																																																																																																																																																																																																	3
CGCT	-	1																																																																																																																																																																																																																																																																																																																																	1
CGTG	-	4	1	1																																																																																																																																																																																																																																																																																																																															6
CTCA	-	6																																																																																																																																																																																																																																																																																																																																	6
CTCC	-	1																																																																																																																																																																																																																																																																																																																																	1
CTCG	-	2																																																																																																																																																																																																																																																																																																																																	2
CTGA	-	2																																																																																																																																																																																																																																																																																																																																	2
CTGT	-	1																																																																																																																																																																																																																																																																																																																																	1
CTTG	-	1																																																																																																																																																																																																																																																																																																																																	1
CTTT	-			1																																																																																																																																																																																																																																																																																																																															1
GAAA	-	10	2																																																																																																																																																																																																																																																																																																																																12
GAAT	-		1																																																																																																																																																																																																																																																																																																																																1
GAGC	-	1	1																																																																																																																																																																																																																																																																																																																																2
GAGT	-	2	1																																																																																																																																																																																																																																																																																																																																3
GATA	-		1																																																																																																																																																																																																																																																																																																																																1
GCAC	-	3																																																																																																																																																																																																																																																																																																																																	3
GCCG	-	1																																																																																																																																																																																																																																																																																																																																	1
GCGT	-	6																																																																																																																																																																																																																																																																																																																																	6
GGAA	-	1																																																																																																																																																																																																																																																																																																																																	1
GGAG	-	2			1																																																																																																																																																																																																																																																																																																																														3
GGGA	-	4		1																																																																																																																																																																																																																																																																																																																															5
GGGT	-	3																																																																																																																																																																																																																																																																																																																																	3
GGTT	-	1																																																																																																																																																																																																																																																																																																																																	1
GTAC	-	1																																																																																																																																																																																																																																																																																																																																	1
GTAG	-	1																																																																																																																																																																																																																																																																																																																																	1
GTCT	-		1																																																																																																																																																																																																																																																																																																																																1
GTGA	-	2	1																																																																																																																																																																																																																																																																																																																																3
GTGC	-	9	1	1																																																																																																																																																																																																																																																																																																																															11
GTGG	-	2	1																																																																																																																																																																																																																																																																																																																																3
GTTG	-		1																																																																																																																																																																																																																																																																																																																																1
GTTT	-	12	1	1																																																																																																																																																																																																																																																																																																																															14
TACC	-	1																																																																																																																																																																																																																																																																																																																																	1
TATC	-	1																																																																																																																																																																																																																																																																																																																																	1
TATT	-	2																																																																																																																																																																																																																																																																																																																																	2
TCAC	-	1																																																																																																																																																																																																																																																																																																																																	1
TCAG	-	1																																																																																																																																																																																																																																																																																																																																	1
TCAT	-	1																																																																																																																																																																																																																																																																																																																																	1
TCTA	-		1																																																																																																																																																																																																																																																																																																																																1
TCTG	-	2	1																																																																																																																																																																																																																																																																																																																																3
TCTT	-	3	1	1																																																																																																																																																																																																																																																																																																																															5
TGAG	-	4																																																																																																																																																																																																																																																																																																																																	4
TGCG	-		1	1																																																																																																																																																																																																																																																																																																																															2
TGGG	-		1																																																																																																																																																																																																																																																																																																																																1
TGTA	-	2																																																																																																																																																																																																																																																																																																																																	2
TGTC	-	1																																																																																																																																																																																																																																																																																																																																	1
TGTT	-	9	3	1																																																																																																																																																																																																																																																																																																																															13
TTCC	-	1																																																																																																																																																																																																																																																																																																																																	1
TTCT	-	2	1																																																																																																																																																																																																																																																																																																																																3
TTGA	-		1																																																																																																																																																																																																																																																																																																																																1
TTGT	-	15	2		1																																																																																																																																																																																																																																																																																																																														18
TTTA	-	4																																																																																																																																																																																																																																																																																																																																	4
TTTC	-	9	1																																																																																																																																																																																																																																																																																																																																10
TTTG	-	30	5	1																																																																																																																																																																																																																																																																																																																															36
AAAAC	25	2																																																																																																																																																																																																																																																																																																																																	27
AAAAG	22	4																																																																																																																																																																																																																																																																																																																																	26
AAAAT	1																																																																																																																																																																																																																																																																																																																																		1
AAACA	8	1																																																																																																																																																																																																																																																																																																																																	9
AAAGA	7	2																																																																																																																																																																																																																																																																																																																																	9
AAAGG	2																																																																																																																																																																																																																																																																																																																																		2
AAATA	1	1																																																																																																																																																																																																																																																																																																																																	2
AAATC	1																																																																																																																																																																																																																																																																																																																																		1
AACAA	3	1																																																																																																																																																																																																																																																																																																																																	4
AACAC	1																																																																																																																																																																																																																																																																																																																																		1
AACAG	1																																																																																																																																																																																																																																																																																																																																		1
AAGAA	21	1																																																																																																																																																																																																																																																																																																																																	22
AAGAG	6																																																																																																																																																																																																																																																																																																																																		6
AAGCA	1																																																																																																																																																																																																																																																																																																																																		1
AAGCT	1																																																																																																																																																																																																																																																																																																																																		1
AAGGG	1																																																																																																																																																																																																																																																																																																																																		1
AAGTG	2																																																																																																																																																																																																																																																																																																																																		2
AATAT	1																																																																																																																																																																																																																																																																																																																																		1
AATTT	1																																																																																																																																																																																																																																																																																																																																		1
ACAAA	13																																																																																																																																																																																																																																																																																																																																		13
ACAAG	1																																																																																																																																																																																																																																																																																																																																		1
ACACA	1	1																																																																																																																																																																																																																																																																																																																																	2
ACACT	1																																																																																																																																																																																																																																																																																																																																		1
ACAGC	1																																																																																																																																																																																																																																																																																																																																		1
ACCAC	2																																																																																																																																																																																																																																																																																																																																		2
ACCCC	4																																																																																																																																																																																																																																																																																																																																		4
ACCTC	1																																																																																																																																																																																																																																																																																																																																		1
ACTCC			1																																																																																																																																																																																																																																																																																																																																1
ACTGA	1																																																																																																																																																																																																																																																																																																																																		1
ACTGG	1																																																																																																																																																																																																																																																																																																																																		1
AGAAA	16																																																																																																																																																																																																																																																																																																																																		16
AGAAC	1																																																																																																																																																																																																																																																																																																																																		1
AGAAG	1	1																																																																																																																																																																																																																																																																																																																																	2
AGAGA	4	1																																																																																																																																																																																																																																																																																																																																	5
AGAGG	3	1																																																																																																																																																																																																																																																																																																																																	4
AGCAA	2																																																																																																																																																																																																																																																																																																																																		2
AGCAG	1																																																																																																																																																																																																																																																																																																																																		1
AGGAA	1																																																																																																																																																																																																																																																																																																																																		1
AGGAG	1																																																																																																																																																																																																																																																																																																																																		1
AGGGA		1																																																																																																																																																																																																																																																																																																																																	1
AGGGG	1																																																																																																																																																																																																																																																																																																																																		1
AGTGA	1																																																																																																																																																																																																																																																																																																																																		1
ATCAA	1																																																																																																																																																																																																																																																																																																																																		1
ATGAA	1																																																																																																																																																																																																																																																																																																																																		1
ATGCG	1																																																																																																																																																																																																																																																																																																																																		1
CAAAA	12	1																																																																																																																																																																																																																																																																																																																																	13
CAAAG	1																																																																																																																																																																																																																																																																																																																																		1
CAATA	1																																																																																																																																																																																																																																																																																																																																		1
CACAA	1																																																																																																																																																																																																																																																																																																																																		1
CACAC	3																																																																																																																																																																																																																																																																																																																																		3
CACAG	1																																																																																																																																																																																																																																																																																																																																		1
CACCC	1																																																																																																																																																																																																																																																																																																																																		1
CACGC	1																																																																																																																																																																																																																																																																																																																																		1
CAGAA	1																																																																																																																																																																																																																																																																																																																																		1
CCAAA	1																																																																																																																																																																																																																																																																																																																																		1
CCACC	1																																																																																																																																																																																																																																																																																																																																		1
CCACG	1																																																																																																																																																																																																																																																																																																																																		1
CCCAC	2		1																																																																																																																																																																																																																																																																																																																																3
CCCCA	1	1																																																																																																																																																																																																																																																																																																																																	2
CCCCT	5																																																																																																																																																																																																																																																																																																																																		5
CCCTC	3																																																																																																																																																																																																																																																																																																																																		3
CCGCA	2																																																																																																																																																																																																																																																																																																																																		2
CCGCG	1																																																																																																																																																																																																																																																																																																																																		1
CCTCA	2																																																																																																																																																																																																																																																																																																																																		2
CCTCC		1	1																																																																																																																																																																																																																																																																																																																																2
CCTCT	4																																																																																																																																																																																																																																																																																																																																		4
CCTTC	1																																																																																																																																																																																																																																																																																																																																		1
CCTTT	2																																																																																																																																																																																																																																																																																																																																		2
CGAGG	1																																																																																																																																																																																																																																																																																																																																		1
CGCAG	1																																																																																																																																																																																																																																																																																																																																		1
CGCGC	1																																																																																																																																																																																																																																																																																																																																		1
CGGCC	1																																																																																																																																																																																																																																																																																																																																		1
CGGCG	1																																																																																																																																																																																																																																																																																																																																		1
CGTGC	1																																																																																																																																																																																																																																																																																																																																		1
CTCCC	1																																																																																																																																																																																																																																																																																																																																		1
CTCCT	2																																																																																																																																																																																																																																																																																																																																		2
CTCTC	1																																																																																																																																																																																																																																																																																																																																		1
CTCTT			1							1																																																																																																																																																																																																																																																																																																																									2
CTGTG	2																																																																																																																																																																																																																																																																																																																																		2
CTTCT	4																																																																																																																																																																																																																																																																																																																																		4
CTTTC	2																																																																																																																																																																																																																																																																																																																																		2
CTTTG	2																																																																																																																																																																																																																																																																																																																																		2
CTTTT	14																																																																																																																																																																																																																																																																																																																																		14
GAAAA	15	2																																																																																																																																																																																																																																																																																																																																	17
GAAAG	1																																																																																																																																																																																																																																																																																																																																		1
GAACG	1																																																																																																																																																																																																																																																																																																																																		1
GAAGA	4																																																																																																																																																																																																																																																																																																																																		4
GAAGG	1																																																																																																																																																																																																																																																																																																																																		1
GACAA	1																																																																																																																																																																																																																																																																																																																																		1
GACGA	1																																																																																																																																																																																																																																																																																																																																		1
GAGAA	6																																																																																																																																																																																																																																																																																																																																		6
GAGAG	2	1																																																																																																																																																																																																																																																																																																																																	3
GAGCC	1																																																																																																																																																																																																																																																																																																																																		1
GAGCG	1																																																																																																																																																																																																																																																																																																																																		1
GAGGA	1	2																																																																																																																																																																																																																																																																																																																																	3
GAGGC	1																																																																																																																																																																																																																																																																																																																																		1
GAGGT	1																																																																																																																																																																																																																																																																																																																																		1
GATGC	1																																																																																																																																																																																																																																																																																																																																		1
GATGT	1																																																																																																																																																																																																																																																																																																																																		1
GCACC	1																																																																																																																																																																																																																																																																																																																																		1
GCACG	3																																																																																																																																																																																																																																																																																																																																		3
GCCCA	1																																																																																																																																																																																																																																																																																																																																		1
GCCCC	1																																																																																																																																																																																																																																																																																																																																		1
GCCGC	1																																																																																																																																																																																																																																																																																																																																		1
GCCGG	1																																																																																																																																																																																																																																																																																																																																		1
GCCGT	1																																																																																																																																																																																																																																																																																																																																		1
GCCTC	1																																																																																																																																																																																																																																																																																																																																		1
GCGCC	1																																																																																																																																																																																																																																																																																																																																		1
GCGGC	4																																																																																																																																																																																																																																																																																																																																		4
GCGGT	2																																																																																																																																																																																																																																																																																																																																		2
GCGTG	1																																																																																																																																																																																																																																																																																																																																		1
GCTAT	1																																																																																																																																																																																																																																																																																																																																		1
GCTCA	1																																																																																																																																																																																																																																																																																																																																		1
GCTTT		1																																																																																																																																																																																																																																																																																																																																	1
GGAAA	1																																																																																																																																																																																																																																																																																																																																		1
GGAAG	1																																																																																																																																																																																																																																																																																																																																		1
GGAGG	5																																																																																																																																																																																																																																																																																																																																		5
GGCAC	1																																																																																																																																																																																																																																																																																																																																		1
GGCCG	1																																																																																																																																																																																																																																																																																																																																		1
GGCGT	1																																																																																																																																																																																																																																																																																																																																		1
GGCTG	1																																																																																																																																																																																																																																																																																																																																		1
GGGAA	1																																																																																																																																																																																																																																																																																																																																		1
GGGAG	2																																																																																																																																																																																																																																																																																																																																		2
GGGAT			1																																																																																																																																																																																																																																																																																																																																1
GGGCG	1																																																																																																																																																																																																																																																																																																																																		1
GGGGA	6																																																																																																																																																																																																																																																																																																																																		6
GGGGC	2																																																																																																																																																																																																																																																																																																																																		2
GGGGT	3																																																																																																																																																																																																																																																																																																																																		3
GGGTG	1																																																																																																																																																																																																																																																																																																																																		1
GGTCG	1																																																																																																																																																																																																																																																																																																																																		1
GGTGC	1																																																																																																																																																																																																																																																																																																																																		1
GGTGG	3																																																																																																																																																																																																																																																																																																																																		3
GGTGT	1																																																																																																																																																																																																																																																																																																																																		1
GTCTC	1																																																																																																																																																																																																																																																																																																																																		1
GTGAA	1	1																																																																																																																																																																																																																																																																																																																																	2
GTGCT	1																																																																																																																																																																																																																																																																																																																																		1
GTGGC	2																																																																																																																																																																																																																																																																																																																																		2
GTGGG	1																																																																																																																																																																																																																																																																																																																																		1
GTGGT		1																																																																																																																																																																																																																																																																																																																																	1
GTGTC	1																																																																																																																																																																																																																																																																																																																																		1
GTGTG	3																																																																																																																																																																																																																																																																																																																																		3
GTTGT	1																																																																																																																																																																																																																																																																																																																																		1
GTTTC	1																																																																																																																																																																																																																																																																																																																																		1
GTTTT	11																																																																																																																																																																																																																																																																																																																																		11
TATTA		1																																																																																																																																																																																																																																																																																																																																	1
TATTT	2																																																																																																																																																																																																																																																																																																																																		2
TCCAC	1																																																																																																																																																																																																																																																																																																																																		1
TCCCC	2	1																																																																																																																																																																																																																																																																																																																																	3
TCCTT	3																																																																																																																																																																																																																																																																																																																																		3
TCGCC	2																																																																																																																																																																																																																																																																																																																																		2
TCGTG	1																																																																																																																																																																																																																																																																																																																																		1
TCTCC	1																																																																																																																																																																																																																																																																																																																																		1
TCTCT	3	1																																																																																																																																																																																																																																																																																																																																	4
TCTTC	3																																																																																																																																																																																																																																																																																																																																		3
TCTTT	10																																																																																																																																																																																																																																																																																																																																		10
TGAAC	1																																																																																																																																																																																																																																																																																																																																		1
TGAAG	2																																																																																																																																																																																																																																																																																																																																		2
TGAGC	1																																																																																																																																																																																																																																																																																																																																		1
TGGGA	1																																																																																																																																																																																																																																																																																																																																		1
TGGGT	1																																																																																																																																																																																																																																																																																																																																		1
TGGTG	1																																																																																																																																																																																																																																																																																																																																		1
TGTCG	1																																																																																																																																																																																																																																																																																																																																		1
TGTGC	1																																																																																																																																																																																																																																																																																																																																		1
TGTGG	1																																																																																																																																																																																																																																																																																																																																		1
TGTGT		1																																																																																																																																																																																																																																																																																																																																	1
TGTTC	1																																																																																																																																																																																																																																																																																																																																		1
TGTTG	2																																																																																																																																																																																																																																																																																																																																		2
TGTTT	13	2	1																																																																																																																																																																																																																																																																																																																																16
TTCTC	1																																																																																																																																																																																																																																																																																																																																		1
TTCTG	1																																																																																																																																																																																																																																																																																																																																		1
TTCTT	4	4		1																																																																																																																																																																																																																																																																																																																															9
TTGAA	1																																																																																																																																																																																																																																																																																																																																		1
TTGCT	1																																																																																																																																																																																																																																																																																																																																		1
TTGTG	2																																																																																																																																																																																																																																																																																																																																		2
TTGTT	12	1																																																																																																																																																																																																																																																																																																																																	13
TTTAG	1																																																																																																																																																																																																																																																																																																																																		1
TTTAT	2																																																																																																																																																																																																																																																																																																																																		2
TTTCC	1																																																																																																																																																																																																																																																																																																																																		1
TTTCG	1																																																																																																																																																																																																																																																																																																																																		1
TTTCT	16	1																																																																																																																																																																																																																																																																																																																																	17
TTTGT	7	3																																																																																																																																																																																																																																																																																																																																	10
TTTTA	5	2																																																																																																																																																																																																																																																																																																																																	7
TTTTC	21	3																																																																																																																																																																																																																																																																																																																																	24
TTTTG	32	2	1																																																																																																																																																																																																																																																																																																																																35
AAAAAG	5																																																																																																																																																																																																																																																																																																																																		5
AAAACA	5																																																																																																																																																																																																																																																																																																																																		5
AAAAGA	2																																																																																																																																																																																																																																																																																																																																		2
AAAAGG	2																																																																																																																																																																																																																																																																																																																																		2
AAACAA	3																																																																																																																																																																																																																																																																																																																																		3
AAAGAA		1																																																																																																																																																																																																																																																																																																																																	1
AAAGAG	1																																																																																																																																																																																																																																																																																																																																		1
AACAAA	3	1																																																																																																																																																																																																																																																																																																																																	4
AACAAG	1																																																																																																																																																																																																																																																																																																																																		1
AACATC	1																																																																																																																																																																																																																																																																																																																																		1
AACCCT	1																																																																																																																																																																																																																																																																																																																																		1
AAGAAA	2	2	1																																																																																																																																																																																																																																																																																																																																5
AAGCAA	1																																																																																																																																																																																																																																																																																																																																		1
AAGGAA	1																																																																																																																																																																																																																																																																																																																																		1
ACAAAA	4																																																																																																																																																																																																																																																																																																																																		4
ACAAAC	1																																																																																																																																																																																																																																																																																																																																		1
ACAACC	2																																																																																																																																																																																																																																																																																																																																		2
ACAATC	1																																																																																																																																																																																																																																																																																																																																		1
ACACAG	1																																																																																																																																																																																																																																																																																																																																		1
ACACAT	4																																																																																																																																																																																																																																																																																																																																		4
ACACCC	1																																																																																																																																																																																																																																																																																																																																		1
ACACGC	5	1																																																																																																																																																																																																																																																																																																																																	6
ACAGAC	1																																																																																																																																																																																																																																																																																																																																		1
ACATAC		1																																																																																																																																																																																																																																																																																																																																	1
ACCACA	1	1																																																																																																																																																																																																																																																																																																																																	2
ACCCAC	1	1																																																																																																																																																																																																																																																																																																																																	2
ACCGCC	1																																																																																																																																																																																																																																																																																																																																		1
ACGACA	1		1																																																																																																																																																																																																																																																																																																																																2
ACGACC	2																																																																																																																																																																																																																																																																																																																																		2
ACGCAC	2																																																																																																																																																																																																																																																																																																																																		2
ACTCAC	1																																																																																																																																																																																																																																																																																																																																		1
AGAAAA	3																																																																																																																																																																																																																																																																																																																																		3
AGAGAA	1																																																																																																																																																																																																																																																																																																																																		1
AGAGGC	1																																																																																																																																																																																																																																																																																																																																		1
AGCAAC	1																																																																																																																																																																																																																																																																																																																																		1
AGCCCG	1																																																																																																																																																																																																																																																																																																																																		1
AGGAAA	1																																																																																																																																																																																																																																																																																																																																		1
AGGGGG	3																																																																																																																																																																																																																																																																																																																																		3
ATGACA	1																																																																																																																																																																																																																																																																																																																																		1
ATGTGC	1																																																																																																																																																																																																																																																																																																																																		1
CAAAAA	4	1																																																																																																																																																																																																																																																																																																																																	5
CAACAG	1	1																																																																																																																																																																																																																																																																																																																																	2
CAAGGA	1																																																																																																																																																																																																																																																																																																																																		1
CAAGGG	1																																																																																																																																																																																																																																																																																																																																		1
CACAAG	1																																																																																																																																																																																																																																																																																																																																		1
CACACC	2				1																																																																																																																																																																																																																																																																																																																														3
CACACG	7	1	1																																																																																																																																																																																																																																																																																																																																9
CACAGA	1																																																																																																																																																																																																																																																																																																																																		1
CACATG	1																																																																																																																																																																																																																																																																																																																																		1
CACCAG	1																																																																																																																																																																																																																																																																																																																																		1
CACCCA	1																																																																																																																																																																																																																																																																																																																																		1
CACCCC	1																																																																																																																																																																																																																																																																																																																																		1
CACCGC	1																																																																																																																																																																																																																																																																																																																																		1
CACGCA	3																																																																																																																																																																																																																																																																																																																																		3
CACGGG		1																																																																																																																																																																																																																																																																																																																																	1
CAGCAC	1																																																																																																																																																																																																																																																																																																																																		1
CAGCCA	1																																																																																																																																																																																																																																																																																																																																		1
CATACG	1																																																																																																																																																																																																																																																																																																																																		1
CATCGG	1																																																																																																																																																																																																																																																																																																																																		1
CCACAC	1	1																																																																																																																																																																																																																																																																																																																																	2
CCACAT	1	1																																																																																																																																																																																																																																																																																																																																	2
CCACCC	1																																																																																																																																																																																																																																																																																																																																		1
CCACCG	2																																																																																																																																																																																																																																																																																																																																		2
CCACGA	1																																																																																																																																																																																																																																																																																																																																		1
CCATCA	1																																																																																																																																																																																																																																																																																																																																		1
CCCACA				1																																																																																																																																																																																																																																																																																																																															1
CCCACT	1																																																																																																																																																																																																																																																																																																																																		1
CCCCAC	1																																																																																																																																																																																																																																																																																																																																		1
CCCCCA	2																																																																																																																																																																																																																																																																																																																																		2
CCCCTC	2																																																																																																																																																																																																																																																																																																																																		2
CCCGAG	1																																																																																																																																																																																																																																																																																																																																		1
CCCGAT	1																																																																																																																																																																																																																																																																																																																																		1
CCGACG	1																																																																																																																																																																																																																																																																																																																																		1
CCGCAG	2																																																																																																																																																																																																																																																																																																																																		2
CCGCCA	1																																																																																																																																																																																																																																																																																																																																		1
CCGCCC	1																																																																																																																																																																																																																																																																																																																																		1
CCGCCT	1																																																																																																																																																																																																																																																																																																																																		1
CCGGCA	1																																																																																																																																																																																																																																																																																																																																		1
CCGGCG	1																																																																																																																																																																																																																																																																																																																																		1
CCTAAC	2	2																																																																																																																																																																																																																																																																																																																																	4
CCTCTG	1																																																																																																																																																																																																																																																																																																																																		1
CCTTCT	2																																																																																																																																																																																																																																																																																																																																		2
CGACAG	1																																																																																																																																																																																																																																																																																																																																		1
CGACCA	1																																																																																																																																																																																																																																																																																																																																		1
CGACCC	1																																																																																																																																																																																																																																																																																																																																		1
CGACCG	1																																																																																																																																																																																																																																																																																																																																		1
CGACGG	1																																																																																																																																																																																																																																																																																																																																		1
CGAGAA	1																																																																																																																																																																																																																																																																																																																																		1
CGAGGA	1																																																																																																																																																																																																																																																																																																																																		1
CGCACA	5																																																																																																																																																																																																																																																																																																																																		5
CGCACC	1																																																																																																																																																																																																																																																																																																																																		1
CGCACG	1																																																																																																																																																																																																																																																																																																																																		1
CGCCAC	1																																																																																																																																																																																																																																																																																																																																		1
CGCCCA	1																																																																																																																																																																																																																																																																																																																																		1
CGCCGG	1																																																																																																																																																																																																																																																																																																																																		1
CGCCTC			1																																																																																																																																																																																																																																																																																																																																1
CGCCTG	1																																																																																																																																																																																																																																																																																																																																		1
CGCGAC	1																																																																																																																																																																																																																																																																																																																																		1
CGCTGC	1																																																																																																																																																																																																																																																																																																																																		1
CGGCTA	1																																																																																																																																																																																																																																																																																																																																		1
CGGTGA	1																																																																																																																																																																																																																																																																																																																																		1
CGGTGC	2																																																																																																																																																																																																																																																																																																																																		2
CGGTGG	2																																																																																																																																																																																																																																																																																																																																		2
CGTACT	2																																																																																																																																																																																																																																																																																																																																		2
CGTCCT	1																																																																																																																																																																																																																																																																																																																																		1
CGTGTG	4																																																																																																																																																																																																																																																																																																																																		4
CGTTGC	1																																																																																																																																																																																																																																																																																																																																		1
CTCACT	1																																																																																																																																																																																																																																																																																																																																		1
CTCCAC	1																																																																																																																																																																																																																																																																																																																																		1
CTCCCT	1																																																																																																																																																																																																																																																																																																																																		1
CTCGCC	1																																																																																																																																																																																																																																																																																																																																		1
CTCGTC	1																																																																																																																																																																																																																																																																																																																																		1
CTCGTG		1																																																																																																																																																																																																																																																																																																																																	1
CTGTCT	1																																																																																																																																																																																																																																																																																																																																		1
CTTCTC	1																																																																																																																																																																																																																																																																																																																																		1
CTTGCC		1																																																																																																																																																																																																																																																																																																																																	1
CTTGCT		1																																																																																																																																																																																																																																																																																																																																	1
CTTGTT	1																																																																																																																																																																																																																																																																																																																																		1
CTTTCT	1																																																																																																																																																																																																																																																																																																																																		1
CTTTTT	5																																																																																																																																																																																																																																																																																																																																		5
GAAAAG	4	1																																																																																																																																																																																																																																																																																																																																	5
GAAAGA	2																																																																																																																																																																																																																																																																																																																																		2
GAAGAG	4																																																																																																																																																																																																																																																																																																																																		4
GACACA	1																																																																																																																																																																																																																																																																																																																																		1
GACAGC	1																																																																																																																																																																																																																																																																																																																																		1
GACGAG	4																																																																																																																																																																																																																																																																																																																																		4
GACGAT	2																																																																																																																																																																																																																																																																																																																																		2
GAGAAG	1																																																																																																																																																																																																																																																																																																																																		1
GAGACA	1																																																																																																																																																																																																																																																																																																																																		1
GAGAGC	1																																																																																																																																																																																																																																																																																																																																		1
GAGAGG	2	1																																																																																																																																																																																																																																																																																																																																	3
GAGAGT	2																																																																																																																																																																																																																																																																																																																																		2
GAGCCC	1																																																																																																																																																																																																																																																																																																																																		1
GAGGCA	1																																																																																																																																																																																																																																																																																																																																		1
GAGGGT	1																																																																																																																																																																																																																																																																																																																																		1
GAGTAC	1																																																																																																																																																																																																																																																																																																																																		1
GCACAC	3																																																																																																																																																																																																																																																																																																																																		3
GCACAT	1																																																																																																																																																																																																																																																																																																																																		1
GCACCC	1																																																																																																																																																																																																																																																																																																																																		1
GCACCT	1																																																																																																																																																																																																																																																																																																																																		1
GCACGC	1																																																																																																																																																																																																																																																																																																																																		1
GCAGCG	1	1																																																																																																																																																																																																																																																																																																																																	2
GCAGGG	1																																																																																																																																																																																																																																																																																																																																		1
GCAGTA	1																																																																																																																																																																																																																																																																																																																																		1
GCCACC	1																																																																																																																																																																																																																																																																																																																																		1
GCCCAT	1																																																																																																																																																																																																																																																																																																																																		1
GCCCGC	1																																																																																																																																																																																																																																																																																																																																		1
GCCGCA	1																																																																																																																																																																																																																																																																																																																																		1
GCCGGG			1																																																																																																																																																																																																																																																																																																																																1
GCCGGT	1																																																																																																																																																																																																																																																																																																																																		1
GCCTCC	1																																																																																																																																																																																																																																																																																																																																		1
GCCTGG	1																																																																																																																																																																																																																																																																																																																																		1
GCGAAG	1																																																																																																																																																																																																																																																																																																																																		1
GCGGCA	4	1																																																																																																																																																																																																																																																																																																																																	5
GCGGGT	1																																																																																																																																																																																																																																																																																																																																		1
GCGGTG	1		1																																																																																																																																																																																																																																																																																																																																2
GCGTCG	1																																																																																																																																																																																																																																																																																																																																		1
GCGTGC	1																																																																																																																																																																																																																																																																																																																																		1
GCGTGT	1	1																																																																																																																																																																																																																																																																																																																																	2
GCTGCC	1																																																																																																																																																																																																																																																																																																																																		1
GCTGCG	2	2																																																																																																																																																																																																																																																																																																																																	4
GCTGGT	1																																																																																																																																																																																																																																																																																																																																		1
GGAAAA		1																																																																																																																																																																																																																																																																																																																																	1
GGAAGA	1																																																																																																																																																																																																																																																																																																																																		1
GGAGTG	1																																																																																																																																																																																																																																																																																																																																		1
GGCACC	1																																																																																																																																																																																																																																																																																																																																		1
GGCAGA	1																																																																																																																																																																																																																																																																																																																																		1
GGCAGC	1																																																																																																																																																																																																																																																																																																																																		1
GGCATG	1																																																																																																																																																																																																																																																																																																																																		1
GGCGAC	1																																																																																																																																																																																																																																																																																																																																		1
GGCGGT	4																																																																																																																																																																																																																																																																																																																																		4
GGGAGA	1																																																																																																																																																																																																																																																																																																																																		1
GGGCGG	1																																																																																																																																																																																																																																																																																																																																		1
GGGGAA	1																																																																																																																																																																																																																																																																																																																																		1
GGGGGT	1																																																																																																																																																																																																																																																																																																																																		1
GGGGTG	1																																																																																																																																																																																																																																																																																																																																		1
GGGGTT	1																																																																																																																																																																																																																																																																																																																																		1
GGGTGA	1																																																																																																																																																																																																																																																																																																																																		1
GGGTGC		1																																																																																																																																																																																																																																																																																																																																	1
GGTCGT	1																																																																																																																																																																																																																																																																																																																																		1
GGTGAT	1																																																																																																																																																																																																																																																																																																																																		1
GGTGCT	1																																																																																																																																																																																																																																																																																																																																		1
GGTGGC	1																																																																																																																																																																																																																																																																																																																																		1
GTACAC	1																																																																																																																																																																																																																																																																																																																																		1
GTCCTC	1																																																																																																																																																																																																																																																																																																																																		1
GTCGCA	1																																																																																																																																																																																																																																																																																																																																		1
GTCGTG	1		1																																																																																																																																																																																																																																																																																																																																2
GTCGTT		1		1																																																																																																																																																																																																																																																																																																																															2
GTCTGT	1																																																																																																																																																																																																																																																																																																																																		1
GTGCGC	1																																																																																																																																																																																																																																																																																																																																		1
GTGCTT	1																																																																																																																																																																																																																																																																																																																																		1
GTGGGT	2																																																																																																																																																																																																																																																																																																																																		2
GTGGTC	1																																																																																																																																																																																																																																																																																																																																		1
GTGGTT	1																																																																																																																																																																																																																																																																																																																																		1
GTGTCT	1																																																																																																																																																																																																																																																																																																																																		1
GTGTGA	1																																																																																																																																																																																																																																																																																																																																		1
GTGTGC	6	1																																																																																																																																																																																																																																																																																																																																	7
GTGTGG	2		2																																																																																																																																																																																																																																																																																																																																4
TAAGAA	1																																																																																																																																																																																																																																																																																																																																		1
TACAGG	1																																																																																																																																																																																																																																																																																																																																		1
TATGCA	1																																																																																																																																																																																																																																																																																																																																		1
TCAAGA	1																																																																																																																																																																																																																																																																																																																																		1
TCAAGT	1																																																																																																																																																																																																																																																																																																																																		1
TCACCG	1																																																																																																																																																																																																																																																																																																																																		1
TCCACC	1																																																																																																																																																																																																																																																																																																																																		1
TCCCCC	1																																																																																																																																																																																																																																																																																																																																		1
TCCGCC	1																																																																																																																																																																																																																																																																																																																																		1
TCCTCG	1																																																																																																																																																																																																																																																																																																																																		1
TCGAAG	1																																																																																																																																																																																																																																																																																																																																		1
TCGGCT	1																																																																																																																																																																																																																																																																																																																																		1
TCGTCA	2																																																																																																																																																																																																																																																																																																																																		2
TCGTCT	1																																																																																																																																																																																																																																																																																																																																		1
TCTCTT	4																																																																																																																																																																																																																																																																																																																																		4
TCTTCC	1																																																																																																																																																																																																																																																																																																																																		1
TCTTTC	2																																																																																																																																																																																																																																																																																																																																		2
TCTTTT	1																																																																																																																																																																																																																																																																																																																																		1
TGACGA	1																																																																																																																																																																																																																																																																																																																																		1
TGACGG	1																																																																																																																																																																																																																																																																																																																																		1
TGCCGC	1																																																																																																																																																																																																																																																																																																																																		1
TGCCGT		1																																																																																																																																																																																																																																																																																																																																	1
TGCGGA	1																																																																																																																																																																																																																																																																																																																																		1
TGCGGC	3	1																																																																																																																																																																																																																																																																																																																																	4
TGCGTG	2																																																																																																																																																																																																																																																																																																																																		2
TGCTGG	1																																																																																																																																																																																																																																																																																																																																		1
TGCTGT	3																																																																																																																																																																																																																																																																																																																																		3
TGCTTG		1																																																																																																																																																																																																																																																																																																																																	1
TGGAGG	1																																																																																																																																																																																																																																																																																																																																		1
TGGCGG	4																																																																																																																																																																																																																																																																																																																																		4
TGGTGT	1																																																																																																																																																																																																																																																																																																																																		1
TGTCGC	1																																																																																																																																																																																																																																																																																																																																		1
TGTGCC	1																																																																																																																																																																																																																																																																																																																																		1
TGTGCG	1	1	1																																																																																																																																																																																																																																																																																																																																3
TGTGGG	1																																																																																																																																																																																																																																																																																																																																		1
TGTGGT	1																																																																																																																																																																																																																																																																																																																																		1
TGTGTA	1				1																																																																																																																																																																																																																																																																																																																														2
TGTGTC	1																																																																																																																																																																																																																																																																																																																																		1
TGTTTT	4	1																																																																																																																																																																																																																																																																																																																																	5
TTCCTA	1																																																																																																																																																																																																																																																																																																																																		1
TTCTTT		1																																																																																																																																																																																																																																																																																																																																	1
TTGCCC	1																																																																																																																																																																																																																																																																																																																																		1
TTGTTC	1																																																																																																																																																																																																																																																																																																																																		1
TTGTTT	2																																																																																																																																																																																																																																																																																																																																		2
TTTATT	1																																																																																																																																																																																																																																																																																																																																		1
TTTCTA			1																																																																																																																																																																																																																																																																																																																																1
TTTCTC	1																																																																																																																																																																																																																																																																																																																																		1
TTTCTT	1																																																																																																																																																																																																																																																																																																																																		1
TTTGCC	1																																																																																																																																																																																																																																																																																																																																		1
TTTGTT	1																																																																																																																																																																																																																																																																																																																																		1
TTTTCC	1																																																																																																																																																																																																																																																																																																																																		1
TTTTCT	4																																																																																																																																																																																																																																																																																																																																		4
TTTTTA	1																																																																																																																																																																																																																																																																																																																																		1
TTTTTC	4																																																																																																																																																																																																																																																																																																																																		4
TTTTTG	2																																																																																																																																																																																																																																																																																																																																		2

Frequency of classified repeat types (considering sequence complementary)
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Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	207	208	209	210	211	212	213	214	215	216	217	218	219	220	221	222	223	224	225	226	227	228	229	230	231	232	233	234	235	236	237	238	239	240	241	242	243	244	245	246	247	248	249	250	251	252	253	254	255	256	257	258	259	260	261	262	263	264	265	266	267	268	269	270	271	272	273	274	275	276	277	278	279	280	281	282	283	284	285	286	287	288	289	290	291	292	293	294	295	296	297	298	299	300	301	302	303	304	305	306	307	308	309	310	311	312	313	314	315	316	317	318	319	320	321	322	323	324	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																																																																																																																																																																																																																																																																																																																1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1		1		1						1																																																																																																																																																																																																																																																																																																						4
AC/GT	-	-	-	912	700	580	584	461	355	288	221	151	118	89	56	42	23	21	21	14	11	9	5	1	4	4	3	1	1	3		1	1			1		2	1		1			1																																																																																																																																																																																																															1																																																																							1	4688
AG/CT	-	-	-	910	761	528	304	124	50	20	17	9	4	4	2		1																																																																																																																																																																																																																																																																																																																		2734
AT/AT	-	-	-	34	14	16	8	4	5	3	2	4	2	3																																																																																																																																																																																																																																																																																																																					95
CG/CG	-	-	-	38	6																																																																																																																																																																																																																																																																																																																														44
AAC/GTT	-	-	352	112	45	14	12	1	2	1	1																																																																																																																																																																																																																																																																																																																								540
AAG/CTT	-	-	104	13	2		1																																																																																																																																																																																																																																																																																																																												120
AAT/ATT	-	-	12	2	5	2	1																																																																																																																																																																																																																																																																																																																												22
ACC/GGT	-	-	191	83	14	3																																																																																																																																																																																																																																																																																																																													291
ACG/CGT	-	-	146	37	13	3	2																																																																																																																																																																																																																																																																																																																												201
ACT/AGT	-	-	6	6	1																																																																																																																																																																																																																																																																																																																														13
AGC/CTG	-	-	86	41	19	6	4	2	1																																																																																																																																																																																																																																																																																																																										159
AGG/CCT	-	-	65	7	3		1																																																																																																																																																																																																																																																																																																																												76
ATC/ATG	-	-	28	2	5			1																																																																																																																																																																																																																																																																																																																											36
CCG/CGG	-	-	134	30	4																																																																																																																																																																																																																																																																																																																														168
AAAC/GTTT	-	140	27	6	1																																																																																																																																																																																																																																																																																																																														174
AAAG/CTTT	-	45	5	3																																																																																																																																																																																																																																																																																																																															53
AAAT/ATTT	-	12	1																																																																																																																																																																																																																																																																																																																																13
AACC/GGTT	-	4	2																																																																																																																																																																																																																																																																																																																																6
AAGC/CTTG	-	3																																																																																																																																																																																																																																																																																																																																	3
AAGG/CCTT	-	2																																																																																																																																																																																																																																																																																																																																	2
AATC/ATTG	-	2	1																																																																																																																																																																																																																																																																																																																																3
AATG/ATTC	-	4	1																																																																																																																																																																																																																																																																																																																																5
ACAG/CTGT	-	10	5																																																																																																																																																																																																																																																																																																																																15
ACAT/ATGT	-	6		2																																																																																																																																																																																																																																																																																																																															8
ACCC/GGGT	-	12	2																																																																																																																																																																																																																																																																																																																																14
ACCT/AGGT	-	2																																																																																																																																																																																																																																																																																																																																	2
ACGC/CGTG	-	27	5	3																																																																																																																																																																																																																																																																																																																															35
ACGT/ACGT	-	1																																																																																																																																																																																																																																																																																																																																	1
ACTC/AGTG	-	20	2																																																																																																																																																																																																																																																																																																																																22
ACTG/AGTC	-	3	1																																																																																																																																																																																																																																																																																																																																4
AGAT/ATCT	-	2	2	1																																																																																																																																																																																																																																																																																																																															5
AGCG/CGCT	-	4	2	1																																																																																																																																																																																																																																																																																																																															7
AGGG/CCCT	-	9		1	1																																																																																																																																																																																																																																																																																																																														11
CCGG/CCGG	-	1																																																																																																																																																																																																																																																																																																																																	1
AAAAC/GTTTT	136	13	2																																																																																																																																																																																																																																																																																																																																151
AAAAG/CTTTT	146	17		1																																																																																																																																																																																																																																																																																																																															164
AAAAT/ATTTT	11	3																																																																																																																																																																																																																																																																																																																																	14
AAACC/GGTTT	1																																																																																																																																																																																																																																																																																																																																		1
AAACG/CGTTT	2																																																																																																																																																																																																																																																																																																																																		2
AAACT/AGTTT	1																																																																																																																																																																																																																																																																																																																																		1
AAAGC/CTTTG	7	1																																																																																																																																																																																																																																																																																																																																	8
AAAGG/CCTTT	13																																																																																																																																																																																																																																																																																																																																		13
AAATC/ATTTG	2																																																																																																																																																																																																																																																																																																																																		2
AAATG/ATTTC	1																																																																																																																																																																																																																																																																																																																																		1
AAATT/AATTT	1																																																																																																																																																																																																																																																																																																																																		1
AACAC/GTGTT	8	2																																																																																																																																																																																																																																																																																																																																	10
AACAG/CTGTT	5																																																																																																																																																																																																																																																																																																																																		5
AACCC/GGGTT	1																																																																																																																																																																																																																																																																																																																																		1
AACGG/CCGTT	1																																																																																																																																																																																																																																																																																																																																		1
AACTG/AGTTC	2																																																																																																																																																																																																																																																																																																																																		2
AAGAC/CTTGT	2																																																																																																																																																																																																																																																																																																																																		2
AAGAG/CTCTT	32	3	1							1																																																																																																																																																																																																																																																																																																																									37
AAGCT/AGCTT	1																																																																																																																																																																																																																																																																																																																																		1
AAGGG/CCCTT	5	1																																																																																																																																																																																																																																																																																																																																	6
AAGTG/ACTTC	6	1																																																																																																																																																																																																																																																																																																																																	7
AATAC/ATTGT	1																																																																																																																																																																																																																																																																																																																																		1
AATAT/ATATT	1	1																																																																																																																																																																																																																																																																																																																																	2
AATTC/AATTG	1																																																																																																																																																																																																																																																																																																																																		1
ACACC/GGTGT	11	1																																																																																																																																																																																																																																																																																																																																	12
ACACG/CGTGT	3																																																																																																																																																																																																																																																																																																																																		3
ACACT/AGTGT	1																																																																																																																																																																																																																																																																																																																																		1
ACAGC/CTGTG	6																																																																																																																																																																																																																																																																																																																																		6
ACATC/ATGTG	1																																																																																																																																																																																																																																																																																																																																		1
ACCCC/GGGGT	17	1	1																																																																																																																																																																																																																																																																																																																																19
ACCCG/CGGGT	1																																																																																																																																																																																																																																																																																																																																		1
ACCGC/CGGTG	6																																																																																																																																																																																																																																																																																																																																		6
ACCTC/AGGTG	4																																																																																																																																																																																																																																																																																																																																		4
ACGAG/CGTCT	2																																																																																																																																																																																																																																																																																																																																		2
ACGCC/CGTGG	6																																																																																																																																																																																																																																																																																																																																		6
ACGGC/CCGTG	6																																																																																																																																																																																																																																																																																																																																		6
ACTCC/AGTGG	1		1																																																																																																																																																																																																																																																																																																																																2
ACTGG/AGTCC	1																																																																																																																																																																																																																																																																																																																																		1
AGAGC/CTCTG	1																																																																																																																																																																																																																																																																																																																																		1
AGAGG/CCTCT	15	4																																																																																																																																																																																																																																																																																																																																	19
AGCAT/ATGCT	1																																																																																																																																																																																																																																																																																																																																		1
AGCCC/CTGGG	2																																																																																																																																																																																																																																																																																																																																		2
AGCCG/CGGCT	1																																																																																																																																																																																																																																																																																																																																		1
AGCGC/CGCTG	1																																																																																																																																																																																																																																																																																																																																		1
AGCGG/CCGCT	1																																																																																																																																																																																																																																																																																																																																		1
AGCTC/AGCTG	2																																																																																																																																																																																																																																																																																																																																		2
AGGCG/CCTCG	5																																																																																																																																																																																																																																																																																																																																		5
AGGGG/CCCCT	25	2	1																																																																																																																																																																																																																																																																																																																																28
ATCCC/ATGGG	1		1																																																																																																																																																																																																																																																																																																																																2
ATCGC/ATGCG	2																																																																																																																																																																																																																																																																																																																																		2
CCCCG/CGGGG	4																																																																																																																																																																																																																																																																																																																																		4
CCCGG/CCGGG	3																																																																																																																																																																																																																																																																																																																																		3
CCGCG/CGCGG	9																																																																																																																																																																																																																																																																																																																																		9
AAAAAC/GTTTTT	28	3																																																																																																																																																																																																																																																																																																																																	31
AAAAAG/CTTTTT	27	4	1																																																																																																																																																																																																																																																																																																																																32
AAAAAT/ATTTTT	2																																																																																																																																																																																																																																																																																																																																		2
AAAAGC/CTTTTG	1																																																																																																																																																																																																																																																																																																																																		1
AAAAGG/CCTTTT	9	2																																																																																																																																																																																																																																																																																																																																	11
AAACAC/GTGTTT	1																																																																																																																																																																																																																																																																																																																																		1
AAAGAG/CTCTTT	12																																																																																																																																																																																																																																																																																																																																		12
AAAGGC/CCTTTG	1																																																																																																																																																																																																																																																																																																																																		1
AAATAG/ATTTCT			1																																																																																																																																																																																																																																																																																																																																1
AACAAG/CTTGTT	3																																																																																																																																																																																																																																																																																																																																		3
AACACC/GGTGTT	1																																																																																																																																																																																																																																																																																																																																		1
AACAGC/CTGTTG	5	1																																																																																																																																																																																																																																																																																																																																	6
AACATC/ATGTTG	1																																																																																																																																																																																																																																																																																																																																		1
AACCAC/GGTTGT	5	1																																																																																																																																																																																																																																																																																																																																	6
AACCCC/GGGGTT	1																																																																																																																																																																																																																																																																																																																																		1
AACCCT/AGGGTT	3	2																																																																																																																																																																																																																																																																																																																																	5
AACGAC/CGTTGT	1	1	1	1																																																																																																																																																																																																																																																																																																																															4
AACGAG/CGTTCT	1																																																																																																																																																																																																																																																																																																																																		1
AACGGC/CCGTTG	1	1																																																																																																																																																																																																																																																																																																																																	2
AACTTG/AAGTTC	1																																																																																																																																																																																																																																																																																																																																		1
AAGAAT/ATTCTT	1																																																																																																																																																																																																																																																																																																																																		1
AAGACG/CGTCTT	1																																																																																																																																																																																																																																																																																																																																		1
AAGAGC/CTCTTG		1																																																																																																																																																																																																																																																																																																																																	1
AAGAGG/CCTCTT	6																																																																																																																																																																																																																																																																																																																																		6
AAGATC/ATCTTG	1																																																																																																																																																																																																																																																																																																																																		1
AAGCAC/CTTGTG	2	1																																																																																																																																																																																																																																																																																																																																	3
AAGCCG/CGGCTT	1																																																																																																																																																																																																																																																																																																																																		1
AAGGAC/CCTTGT	1																																																																																																																																																																																																																																																																																																																																		1
AAGGAG/CCTTCT	4																																																																																																																																																																																																																																																																																																																																		4
AAGGCG/CCTTCG	1																																																																																																																																																																																																																																																																																																																																		1
AAGGGC/CCCTTG	2	1																																																																																																																																																																																																																																																																																																																																	3
AAGGGG/CCCCTT	1																																																																																																																																																																																																																																																																																																																																		1
AAGTCG/ACTTCG	1																																																																																																																																																																																																																																																																																																																																		1
AATAGG/ATTCCT	1																																																																																																																																																																																																																																																																																																																																		1
AATCAC/ATTGTG	1																																																																																																																																																																																																																																																																																																																																		1
AATGAC/ATTGTC	1																																																																																																																																																																																																																																																																																																																																		1
ACACAG/CTGTGT	7																																																																																																																																																																																																																																																																																																																																		7
ACACAT/ATGTGT	5	1			1																																																																																																																																																																																																																																																																																																																														7
ACACCC/GGGTGT	11	2	2	1	1																																																																																																																																																																																																																																																																																																																														17
ACACGC/CGTGTG	39	5	2																																																																																																																																																																																																																																																																																																																																46
ACACGT/ACGTGT	1																																																																																																																																																																																																																																																																																																																																		1
ACACTC/AGTGTG	2																																																																																																																																																																																																																																																																																																																																		2
ACAGAG/CTCTGT	2																																																																																																																																																																																																																																																																																																																																		2
ACAGCC/CTGTGG	1																																																																																																																																																																																																																																																																																																																																		1
ACAGCG/CGCTGT	3																																																																																																																																																																																																																																																																																																																																		3
ACAGGC/CCTGTG	1																																																																																																																																																																																																																																																																																																																																		1
ACAGGT/ACCTGT	1																																																																																																																																																																																																																																																																																																																																		1
ACATCC/ATGTGG	1	1																																																																																																																																																																																																																																																																																																																																	2
ACATGC/ATGTGC	3																																																																																																																																																																																																																																																																																																																																		3
ACCACG/CGTGGT	7		1																																																																																																																																																																																																																																																																																																																																8
ACCAGC/CTGGTG	5																																																																																																																																																																																																																																																																																																																																		5
ACCATC/ATGGTG	2																																																																																																																																																																																																																																																																																																																																		2
ACCCCC/GGGGGT	7																																																																																																																																																																																																																																																																																																																																		7
ACCCCG/CGGGGT	1																																																																																																																																																																																																																																																																																																																																		1
ACCCGC/CGGGTG	3	1																																																																																																																																																																																																																																																																																																																																	4
ACCCTC/AGGGTG	2																																																																																																																																																																																																																																																																																																																																		2
ACCGCC/CGGTGG	19		1																																																																																																																																																																																																																																																																																																																																20
ACCGCG/CGCGGT	2																																																																																																																																																																																																																																																																																																																																		2
ACCGGC/CCGGTG	5																																																																																																																																																																																																																																																																																																																																		5
ACCGTC/ACGGTG	3																																																																																																																																																																																																																																																																																																																																		3
ACCTCC/AGGTGG	3																																																																																																																																																																																																																																																																																																																																		3
ACCTGC/AGGTGC	1																																																																																																																																																																																																																																																																																																																																		1
ACGAGC/CGTGCT		1																																																																																																																																																																																																																																																																																																																																	1
ACGAGG/CCTCGT	9																																																																																																																																																																																																																																																																																																																																		9
ACGAGT/ACTCGT	3																																																																																																																																																																																																																																																																																																																																		3
ACGATG/ATCGTC	5																																																																																																																																																																																																																																																																																																																																		5
ACGCAT/ATGCGT	1																																																																																																																																																																																																																																																																																																																																		1
ACGCCC/CGTGGG	1																																																																																																																																																																																																																																																																																																																																		1
ACGCCG/CGGCGT	2																																																																																																																																																																																																																																																																																																																																		2
ACGCGC/CGCGTG	4																																																																																																																																																																																																																																																																																																																																		4
ACGGCG/CCGTCG	2																																																																																																																																																																																																																																																																																																																																		2
ACGGCT/AGCCGT	1																																																																																																																																																																																																																																																																																																																																		1
ACGGGC/CCCGTG		1																																																																																																																																																																																																																																																																																																																																	1
ACTCCC/AGTGGG	2																																																																																																																																																																																																																																																																																																																																		2
ACTCTC/AGAGTG	3																																																																																																																																																																																																																																																																																																																																		3
ACTGCG/AGTCGC	1																																																																																																																																																																																																																																																																																																																																		1
ACTGCT/AGCAGT	1																																																																																																																																																																																																																																																																																																																																		1
AGAGCG/CGCTCT	1																																																																																																																																																																																																																																																																																																																																		1
AGAGGC/CCTCTG	4																																																																																																																																																																																																																																																																																																																																		4
AGAGGG/CCCTCT	4	1																																																																																																																																																																																																																																																																																																																																	5
AGCCCG/CGGGCT	3																																																																																																																																																																																																																																																																																																																																		3
AGCCGC/CGGCTG	8	3																																																																																																																																																																																																																																																																																																																																	11
AGCGGC/CCGCTG	9	2																																																																																																																																																																																																																																																																																																																																	11
AGGCCC/CCTGGG	1																																																																																																																																																																																																																																																																																																																																		1
AGGCGC/CCTGCG	1																																																																																																																																																																																																																																																																																																																																		1
AGGCGG/CCGCCT	3		1																																																																																																																																																																																																																																																																																																																																4
AGGGCG/CCCTCG	1																																																																																																																																																																																																																																																																																																																																		1
AGGGGC/CCCCTG	1																																																																																																																																																																																																																																																																																																																																		1
AGGGGG/CCCCCT	6																																																																																																																																																																																																																																																																																																																																		6
ATATGC/ATATGC	1																																																																																																																																																																																																																																																																																																																																		1
ATCCCG/ATCGGG	1																																																																																																																																																																																																																																																																																																																																		1
ATCCGC/ATGCGG	1																																																																																																																																																																																																																																																																																																																																		1
ATCGGC/ATGCCG	1																																																																																																																																																																																																																																																																																																																																		1
ATGCCC/ATGGGC	2																																																																																																																																																																																																																																																																																																																																		2
CCCCCG/CGGGGG	2																																																																																																																																																																																																																																																																																																																																		2
CCCCGG/CCGGGG			1																																																																																																																																																																																																																																																																																																																																1
CCCGCG/CGCGGG	1																																																																																																																																																																																																																																																																																																																																		1
CCGGCG/CCGGCG	2																																																																																																																																																																																																																																																																																																																																		2
