Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-64/megassr/results/hub_GCA_030316485.1/fasta/hub_GCA_030316485.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           4746500
Total number of identified SSRs:                 21
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	7
4	1
5	2
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	2								2
GC	-	-	-	1								1
AGC	-	-	1									1
CAG	-	-	1									1
CCG	-	-	1									1
CGC	-	-	1									1
CGG	-	-	2									2
GGC	-	-	1									1
GCCA	-	1										1
GCGCC	1											1
GCGCG	1											1
CCAGCC			1									1
CGCCAG	1											1
GAACAG											1	1
GAAGTC	1											1
GCCACC	1											1
GCTGGC	1											1
GCTGGG	1											1
TACGCT	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	3								3
AGC/CTG	-	-	2									2
CCG/CGG	-	-	5									5
AGCC/CTGG	-	1										1
CCGCG/CGCGG	2											2
AACAGG/CCTGTT											1	1
AAGCGT/ACGCTT	1											1
AAGTCG/ACTTCG	1											1
ACCGCC/CGGTGG	1											1
AGCCCC/CTGGGG	1		1									2
AGCGCC/CGCTGG	2											2
