Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-25/megassr/results/hub_GCA_030014105.1/fasta/hub_GCA_030014105.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           2526290
Total number of identified SSRs:                 17
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	2
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	1		1
CT	-	-	-	1		1
TA	-	-	-	3		3
AAG	-	-	1			1
AAT	-	-			1	1
AAAAG	2					2
AATTA	1					1
ATTAT	1					1
TAAAT	1					1
AATGAT	1					1
TAATGA	1					1
TATAGC	1					1
TGTAGT	1					1
TTCTTT	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AG/CT	-	-	-	1		1
AT/AT	-	-	-	4		4
AAG/CTT	-	-	1			1
AAT/ATT	-	-			1	1
AAAAG/CTTTT	2					2
AAATT/AATTT	2					2
AATAT/ATATT	1					1
AAAAAG/CTTTTT	1					1
AACTAC/AGTTGT	1					1
AATGAT/ATCATT	2					2
AGCTAT/AGCTAT	1					1
