Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-10/megassr/results/hub_GCA_030014025.1/fasta/hub_GCA_030014025.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4
Total size of examined sequences (bp):           2251807
Total number of identified SSRs:                 17
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	6
4	1
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	2	2
TA	-	-	-	1	1
AAC	-	-	1		1
ACT	-	-	1		1
ATC	-	-	1		1
GAT	-	-	1		1
GTA	-	-	1		1
TTG	-	-	1		1
AGAA	-	1			1
AAATT	1				1
CAATA	1				1
CTATT	1				1
TTAAA	1				1
ATCTGG	1				1
GCTTTT	1				1
TAAAAA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	3	3
AAC/GTT	-	-	2		2
ACT/AGT	-	-	2		2
ATC/ATG	-	-	2		2
AAAG/CTTT	-	1			1
AAATT/AATTT	2				2
AATAC/ATTGT	1				1
AATAG/ATTCT	1				1
AAAAAT/ATTTTT	1				1
AAAAGC/CTTTTG	1				1
AGATCC/ATCTGG	1				1
