Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-8/megassr/results/hub_GCA_029992245.1/fasta/hub_GCA_029992245.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              668
Total size of examined sequences (bp):           705814
Total number of identified SSRs:                 36
Number of SSR containing sequences:              33
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	15
3	1
4	7
5	7
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AG	-	-	-						1										1
AT	-	-	-	1	2					1									4
CA	-	-	-	1															1
GT	-	-	-						1										1
TA	-	-	-	3		1			1		1								6
TC	-	-	-	1															1
TG	-	-	-					1											1
AAT	-	-		1															1
AAAT	-	1																	1
AATA	-			1															1
ATAA	-		1																1
CTTT	-		1																1
TTTA	-	2	1																3
AAAAT	1																		1
AATAA	1																		1
AATTT	1																		1
AGAAA	1																		1
TTATT	1																		1
TTGTT	1																		1
TTTAT	1																		1
AAATAA	1																		1
CAAAAA	1																		1
CTATGT	1																		1
TTGATA	1																		1
TTTATC	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AC/GT	-	-	-	1				1	1										3
AG/CT	-	-	-	1					1										2
AT/AT	-	-	-	4	2	1			1	1	1								10
AAT/ATT	-	-		1															1
AAAG/CTTT	-		1																1
AAAT/ATTT	-	3	2	1															6
AAAAC/GTTTT	1																		1
AAAAG/CTTTT	1																		1
AAAAT/ATTTT	4																		4
AAATT/AATTT	1																		1
AAAAAC/GTTTTT	1																		1
AAAAAT/ATTTTT	1																		1
AAAGAT/ATCTTT	1																		1
AATATC/ATATTG	1																		1
ACATAG/ATGTCT	1																		1
