Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-95/megassr/results/hub_GCA_029854355.1/fasta/hub_GCA_029854355.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           5371745
Total number of identified SSRs:                 37
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	10
3	13
4	2
5	5
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CG	-	-	-	4		1									5
GC	-	-	-	4											4
TA	-	-	-	1											1
CGC	-	-	2												2
CGG	-	-	3												3
GCA	-	-				1									1
GCC	-	-	2												2
GCG	-	-	1	1											2
GCT	-	-	1												1
GGC	-	-	2												2
GCCA	-	1													1
TGGC	-	1													1
CGCGG	1														1
GCAAG														1	1
GGCGC	1														1
GGCTG	1														1
GTTTA	1														1
CAGTAA	1														1
CGACTT	1														1
CGCCAG	1														1
CTCTTA	1														1
CTGCTC											1				1
GCCAGC	1														1
TGGTCG					1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AT/AT	-	-	-	1											1
CG/CG	-	-	-	8		1									9
AGC/CTG	-	-	1			1									2
CCG/CGG	-	-	10	1											11
AGCC/CTGG	-	2													2
AAACT/AGTTT	1														1
AAGGC/CCTTG														1	1
AGCCC/CTGGG	1														1
CCGCG/CGCGG	2														2
AACAGT/ACTGTT	1														1
AAGAGT/ACTCTT	1														1
AAGTCG/ACTTCG	1														1
ACCACG/CGTGGT					1										1
AGCAGG/CCTGCT											1				1
AGCGCC/CGCTGG	2														2
