Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-23/megassr/results/hub_GCA_028505775.1/fasta/hub_GCA_028505775.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              29
Total size of examined sequences (bp):           38054667
Total number of identified SSRs:                 3630
Number of SSR containing sequences:              24
Number of sequences containing more than 1 SSR:  22
Number of SSRs present in compound formation:    405


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	526
2	744
3	502
4	369
5	898
6	591

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	15	22	14	13	13	12	15	12	14	16	8	9	6	7	4	1	3	6	4	3	2	2	8		1	3	1	1	2	2	1	2																			222
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	2	5	1		3	2						1																																						18
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2		2	3	1	2	1		1																																										12
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	32	23	16	19	14	21	21	11	21	9	11	6	5	10	3	7	7	7	5	4	4	3	1		2	1	1	3		1		1	2						1				1							1	274
AC	-	-	-	8	3	2				1	1	2						1								1			1										1																													21
AG	-	-	-	30	15	14	8	5	2	2	2	2		1	1	2		1					1								1																																					87
AT	-	-	-	84	26	18	12	7	2	3	3			1																																																						156
CA	-	-	-	7	5	3	3	5	2	2	1	1	1	1	1							1						1																					1																			35
CG	-	-	-	1																																																																1
CT	-	-	-	26	4	5	1	2	3			1			1		1				1				1		1																																									47
GA	-	-	-	23	8	2	4	3	2	3	1	3	1		1	1	2		1																																																	55
GC	-	-	-	1																																																																1
GT	-	-	-	6	3	2	2			1	2	1		1					1																																																	19
TA	-	-	-	98	50	25	14	7	3	4		1			1	1																																																				204
TC	-	-	-	31	21	2	7	8	5		3	3	1	1			1			1																								1																								85
TG	-	-	-	14	1	7	2	1	2	1	1	1			1			1																									1																									33
AAC	-	-	3	3				1																																																												7
AAG	-	-	12	6	3	4				2				1																																																						28
AAT	-	-	17	7	4	1	1			1					1		1																																																			33
ACA	-	-	5		1							1																																																								7
ACC	-	-	2		1																																																															3
ACG	-	-	2																																																																	2
ACT	-	-	1	2	1	1			1																																																											6
AGA	-	-	8	3	1	1	1		2		1		1										1																																													19
AGC	-	-	3	2	3			2	1																																																											11
AGG	-	-	1																																																																	1
AGT	-	-	1						1																																																											2
ATA	-	-	3	3	1		1	1				1																																																								10
ATC	-	-	4																																																																	4
ATG	-	-	3	3	1	1																																																														8
ATT	-	-	11	1	3	1	1																																																													17
CAA	-	-	7	2	2				2																																																											13
CAC	-	-	3																																																																	3
CAG	-	-	4	3		2																																																														9
CAT	-	-	3	5	1																																																															9
CCA	-	-	6		1	1																																																														8
CCG	-	-	2	1																																																																3
CCT	-	-						1																																																												1
CGA	-	-		1																																																																1
CGC	-	-		1																																																																1
CGG	-	-	1																																																																	1
CTA	-	-	2				1																															1																														4
CTC	-	-	2					3																																																												5
CTG	-	-	3			1		1																																																												5
CTT	-	-	9	3	3	2	1	2		1	1																																																									22
GAA	-	-	8	4	2				1																										1																																	16
GAC	-	-	3																																																																	3
GAG	-	-	4	3										1																																																						8
GAT	-	-	8	1																																																																9
GCA	-	-	4	3	1																																																															8
GCC	-	-	5	1																																																																6
GCG	-	-	6																																																																	6
GCT	-	-	2		1				1																																																											4
GGA	-	-	6	2																																																																8
GGC	-	-	7	1																																																																8
GGT	-	-	3	1	1	2																																																														7
GTA	-	-	1	1	2																																																															4
GTC	-	-	2																																																																	2
GTG	-	-	5	1	1	1																																																														8
GTT	-	-	4	2	2																																																															8
TAA	-	-	5	3	1	1																																																														10
TAC	-	-	2	1	2		1			1		1																																																								8
TAG	-	-	2	3	1						1																																																									7
TAT	-	-	4		3	1		1																																																												9
TCA	-	-	5	1																																																																6
TCC	-	-	1	2	2		1																																																													6
TCG	-	-	1	1				1																																																												3
TCT	-	-	3	1	3		1	1	1			1																																																								11
TGA	-	-	3	3	5		1																																																													12
TGC	-	-	5	2	2	2	2																																																													13
TGG	-	-	5	1																																																																6
TGT	-	-	4	1		1	1		1							1																																																				9
TTA	-	-	13	5	2			1	2																																																											23
TTC	-	-	12	3		2	1	1			1				1	1																									1																											23
TTG	-	-	4	2	1	1																																																														8
AAAC	-	1																																																																		1
AAAG	-	14	8		1	1																																																														24
AAAT	-	12	6	2																																																																20
AAGA	-	5	2	2							1																																																									10
AATA	-	5		2																																																																7
AATC	-	6																																																																		6
AATG	-		1																																																																	1
AATT	-	3	1																																																																	4
ACAG	-		1																																																																	1
ACAT	-	4	1				1																																																													6
ACCA	-	1																																																																		1
ACCT	-	1																																																																		1
AGAA	-	12	3																																																																	15
AGAT	-	3																																																																		3
AGCT	-	1																																																																		1
AGGA	-	1																																																																		1
AGGG	-	1																																																																		1
AGTG	-	1																																																																		1
AGTT	-		1																																																																	1
ATAA	-	8	2	1																																																																11
ATAC	-	2	2																																																																	4
ATAG	-	3	1																																																																	4
ATCA	-	6	1																																																																	7
ATGA	-	1																																																																		1
ATGG	-	3																																																																		3
ATGT	-	5	2		1																																																															8
ATTA	-	3		1																																																																4
ATTC	-	1		1																																																																2
ATTG	-	1																																																																		1
ATTT	-	6	2																																																																	8
CAAT	-	2																																																																		2
CACT	-	2		1		1																																																														4
CATA	-	4													1																																																					5
CATC	-				1																																																															1
CATG	-	2																																																																		2
CATT	-	1																																																																		1
CCTA	-	1																																																																		1
CCTT	-	1																																																																		1
CTAT	-						1																																																													1
CTCA	-	1	1																																																																	2
CTCG	-	2																																																																		2
CTGG	-	1																																																																		1
CTTC	-	2	1																																																																	3
CTTT	-	7	4	2																																																																13
GAAA	-	3			1							1																																																								5
GAAT	-	2	1																																																																	3
GAGG	-		1																																																																	1
GATA	-							1																																																												1
GCTT	-	1																																																																		1
GGAG	-	1																																																																		1
GGTA	-	1																																																																		1
GGTT	-		1																																																																	1
GTAG	-	1																																																																		1
GTAT	-	5	1																																																																	6
GTCA	-	1																																																																		1
GTCT	-	1																																																																		1
GTGA	-	2																																																																		2
GTTG	-	1																																																																		1
TAAA	-	8																																																																		8
TAAT	-	6																																																																		6
TACA	-	8	2	1	1																																																															12
TACT	-	1																																																																		1
TAGA	-	1																																																																		1
TAGG	-	2																																																																		2
TATG	-	1		1																																																																2
TATT	-	2		1																																																																3
TCAA	-	2	1	1	1																																																															5
TCAT	-	1	1																																																																	2
TCCT	-		1																																																																	1
TCGG	-	1																																																																		1
TCTA	-	1																																																																		1
TCTG	-		1																																																																	1
TCTT	-	9	2						1		1																																																									13
TGAA	-	3																																																																		3
TGAC	-	1																																																																		1
TGAT	-		1																																																																	1
TGGT	-	1																																																																		1
TGTA	-	8	2	3																																																																13
TGTT	-	1																																																																		1
TTAA	-		1																																																																	1
TTAT	-	4	1																																																																	5
TTCA	-	3																																																																		3
TTCC	-	1																																																																		1
TTCT	-	7			1																																																															8
TTGA	-	4	3	4																																																																11
TTGC	-	1																																																																		1
TTGG	-	1																																																																		1
TTGT	-	1																																																																		1
TTTA	-	12	2		1																																																															15
TTTC	-	5	6	3	1	3		1								1																																																				20
AAAAC	3	1																																																																		4
AAAAG	39	12	6					1																																																												58
AAAAT	33	4	1							1																																																										39
AAACA	4	2																																																																		6
AAACC	2																																																																			2
AAAGA	10	5	1																																																																	16
AAAGC	2																																																																			2
AAAGG	5	2	1																																																																	8
AAATA	7	3																				1																																														11
AAATC		2																																																																		2
AAATG	1																																																																			1
AAATT	6																																																																			6
AACAA			1																																																																	1
AACAC	1																																																																			1
AACGA	1																																																																			1
AACTA	3																																																																			3
AACTG	1																																																																			1
AAGAA	11	5	1																																																																	17
AAGAC	1																																																																			1
AAGAG	2																																																																			2
AAGGA	1	1																																																																		2
AAGGG	1																																																																			1
AAGTC	1																																																																			1
AAGTG	1																																																																			1
AATAA	10	4																																																																		14
AATAT	7																																																																			7
AATCA	1																																																																			1
AATCC	3																																																																			3
AATCT	1																																																																			1
AATGA	2																																																																			2
AATGC		1																																																																		1
AATTA	8																																																																			8
AATTC	1																																																																			1
AATTG	1																																																																			1
AATTT	2																																																																			2
ACAAC	1																																																																			1
ACAAG	1																																																																			1
ACAGT	1																																																																			1
ACATG	3																																																																			3
ACCAA	2																																																																			2
ACCAG	1																																																																			1
ACCCC	1																																																																			1
ACCGA	1																																																																			1
ACGAA	1																																																																			1
ACGAG	1																																																																			1
ACTAG	1																																																																			1
ACTTC	1																																																																			1
AGAAA	17		1					1																																																												19
AGAAG	5																																																																			5
AGAGA	1																																																																			1
AGAGG	1	1																																																																		2
AGATA	1																																																																			1
AGATC		1																																																																		1
AGCAA	1																																																																			1
AGGAG	1																																																																			1
AGGAT	1																																																																			1
AGGGA	2																																																																			2
AGGTA	1																																																																			1
AGGTT	2																																																																			2
AGTAC	2																																																																			2
AGTGT	1																																																																			1
ATAAA	14	3																																																																		17
ATAAT	2																																																																			2
ATACT	2																																																																			2
ATAGA	1																																																																			1
ATAGG	1																																																																			1
ATATA	3																																																																			3
ATATC	1																																																																			1
ATATG	1																																																																			1
ATATT	7																																																																			7
ATCAT	1																																																																			1
ATCCC	1	1																																																																		2
ATCTC	2																																																																			2
ATGAG	2																																																																			2
ATGAT	1																																																																			1
ATGCA	2																																																																			2
ATGTA	1																																																																			1
ATTAA	8																																																																			8
ATTAT	1	2																																																																		3
ATTCA	1																																																																			1
ATTGA	1																																																																			1
ATTGC	1																																																																			1
ATTGT	1																																																																			1
ATTTA	1	1																																																																		2
ATTTC	2																																																																			2
ATTTG	3		1																																																																	4
ATTTT	12	2		1																																																																15
CAAAA	4			1																																																																5
CAAAG	1		1																																																																	2
CAATA	1																																																																			1
CAATG	1																																																																			1
CACGG	1																																																																			1
CAGAT		1																																																																		1
CAGCC	1																																																																			1
CAGGA	1																																																																			1
CATAC	1																																																																			1
CATAT	1																																																																			1
CATCC	1																																																																			1
CATCT	2		1																																																																	3
CATTT	2																																																																			2
CCAAA	2																																																																			2
CCAAC	4																																																																			4
CCAAT		1																																																																		1
CCACA	1																																																																			1
CCACC	1																																																																			1
CCAGT		1																																																																		1
CCATA	1																																																																			1
CCATT		1																																																																		1
CCCAA	2																																																																			2
CCCAT	1																																																																			1
CCCCT	2																																																																			2
CCCGT	1																																																																			1
CCCTC	1																																																																			1
CCCTT	1																																																																			1
CCGCG	1																																																																			1
CCGGT	1																																																																			1
CCGTA	2																																																																			2
CCTAA		1																																																																		1
CCTAT	1																																																																			1
CCTCC	2																																																																			2
CCTTC	3																																																																			3
CCTTT	3		1																																																																	4
CGAAC	1																																																																			1
CGAAT	1																																																																			1
CGAGG		1																																																																		1
CGCCT	1																																																																			1
CGTCT		1																																																																		1
CGTGT		1																																																																		1
CTAAA	1																																																																			1
CTACT	1																																																																			1
CTAGT	1	1																																																																		2
CTATC	2	1																																																																		3
CTCAG	1																																																																			1
CTCCA	1																																																																			1
CTCCG	1																																																																			1
CTCCT	1																																																																			1
CTCTC			1																																																																	1
CTCTT	1																																																																			1
CTGCC	1																																																																			1
CTTCC	1																																																																			1
CTTCT	2																																																																			2
CTTTC	2																																																																			2
CTTTG	1																																																																			1
CTTTT	13	7	4																																																																	24
GAAAA	13	1																																																																		14
GAAAG	1																																																																			1
GAAAT	1																																																																			1
GAACC	1																																																																			1
GAAGA	1																																																																			1
GAAGG	1																																																																			1
GAATA	1																																																																			1
GAATT	1																																																																			1
GACCT	2																																																																			2
GACTT	1																																																																			1
GAGAC	1																																																																			1
GAGAG	2																																																																			2
GAGAT	2	1																																																																		3
GAGCC	1																																																																			1
GAGGA	1																																																																			1
GAGGG	3																																																																			3
GATGA	1																																																																			1
GATGT	1																																																																			1
GATTG	1																																																																			1
GCAAA	1																																																																			1
GCCGA	1																																																																			1
GCCTC	1																																																																			1
GCGAA	1																																																																			1
GCGTG	1																																																																			1
GCTGA	2																																																																			2
GGAAA	1																																																																			1
GGAAG		1																																																																		1
GGAAT	1																																																																			1
GGACA	1																																																																			1
GGACC	1																																																																			1
GGAGA	1																																																																			1
GGAGG	1																																																																			1
GGATT		1																																																																		1
GGCTG	1																																																																			1
GGGAG	1																																																																			1
GGGAT	1																																																																			1
GGGTG	1																																																																			1
GGTAG	1																																																																			1
GGTCT	1																																																																			1
GGTGG	1																																																																			1
GGTGT	1																																																																			1
GGTTC	1																																																																			1
GTAAA	1																																																																			1
GTACA	1																																																																			1
GTATA	1																																																																			1
GTATG	1																																																																			1
GTCAT		1																																																																		1
GTCCT	1																																																																			1
GTCGA	1																																																																			1
GTGTA	1																																																																			1
GTGTT	1																																																																			1
GTTAG		1																																																																		1
GTTCA	1																																																																			1
GTTGG	2																																																																			2
TAAAA	7	2																																																																		9
TAAAT	4	1																																																																		5
TAATA	2																																																																			2
TAATT	4																																																																			4
TACAG	2																																																																			2
TACAT		1																																																																		1
TACCA			1																																																																	1
TACCC	1																																																																			1
TACCG	1																																																																			1
TACTG	1																																																																			1
TAGAT		1																																																																		1
TAGCT	1																																																																			1
TAGGT	1																																																																			1
TAGTC	1																																																																			1
TAGTT	2																																																																			2
TATAA	1																																																																			1
TATAG	1																																																																			1
TATAT	4																																																																			4
TATTA	2																																																																			2
TATTG	1																																																																			1
TATTT	21	4																																																																		25
TCAAA	1																																																																			1
TCACC	1																																																																			1
TCAGA	1																																																																			1
TCAGC	1																																																																			1
TCAGG	1																																																																			1
TCATA	1																																																																			1
TCATT	1		1																																																																	2
TCCTC	1																																																																			1
TCGGG	1																																																																			1
TCTAC	1																																																																			1
TCTAT		1																																																																		1
TCTCC	1																																																																			1
TCTCT	2	1			1																																																															4
TCTTA	1																																																																			1
TCTTC	1																																																																			1
TCTTT	12	4	1	1																																																																18
TGAAA	1																																																																			1
TGAAT	1																																																																			1
TGACA	1																																																																			1
TGATA	4																																																																			4
TGATG	1																																																																			1
TGATT	1																																																																			1
TGCTA	1																																																																			1
TGCTG	1																																																																			1
TGCTT	1																																																																			1
TGGAT	1																																																																			1
TGGCT	1																																																																			1
TGGGT	1																																																																			1
TGTAC	3																																																																			3
TGTAT	1																																																																			1
TGTCA	1																																																																			1
TGTCG	2																																																																			2
TGTTG	1																																																																			1
TTAAA	7																																																																			7
TTAAT	11	1																																																																		12
TTACT	1																																																																			1
TTATA	1																																																																			1
TTATC	1																																																																			1
TTATT	14	1	1																																																																	16
TTCAC	1																																																																			1
TTCAG	1																																																																			1
TTCCC	1																																																																			1
TTCCT	2																																																																			2
TTCTC	1																																																																			1
TTCTT	11		1		1																																																															13
TTGAA	1																																																																			1
TTGAC	1																																																																			1
TTGCA	1																																																																			1
TTGCC	1																																																																			1
TTGCG	1																																																																			1
TTGCT	1																																																																			1
TTGGT	1																																																																			1
TTGTA	1																																																																			1
TTGTC	1																																																																			1
TTTAA	3																																																																			3
TTTAC	1																																																																			1
TTTAT	17	5		1																																																																23
TTTCA	1																																																																			1
TTTCC	7																																																																			7
TTTCT	18	4	1	2	1																																																															26
TTTGA		1																																																																		1
TTTGC	1																																																																			1
TTTGT	2																																																																			2
TTTTA	19	7	2	1																																																																29
TTTTC	39	16	3	2																																																																60
TTTTG	3																																																																			3
AAAAAG	13	3	2																																																																	18
AAAAAT	19	3																																																																		22
AAAACA	1																																																																			1
AAAAGA	7	4		1																																																																12
AAAAGC	1																																																																			1
AAAAGG	2																																																																			2
AAAAGT	1																																																																			1
AAAATA	3	1																																																																		4
AAAATT	2																																																																			2
AAACAC	1																																																																			1
AAACCA	1																																																																			1
AAACCC	1																																																																			1
AAAGAA	3	1																																																																		4
AAAGAC	1																																																																			1
AAAGAG	2																																																																			2
AAAGCC	1																																																																			1
AAAGGA	2																																																																			2
AAATAA	1																																																																			1
AAATCA	1																																																																			1
AAATCC	1																																																																			1
AAATCT	1																																																																			1
AAATTA	1																																																																			1
AACAAG	1																																																																			1
AACACA	1																																																																			1
AACACC		1																																																																		1
AACCCA	1																																																																			1
AACGGA	1																																																																			1
AAGAAA	4																																																																			4
AAGAAC	1																																																																			1
AAGAGA	1																																																																			1
AAGAGG	1																																																																			1
AAGCCG		1																																																																		1
AATAAA	3																																																																			3
AATATT	3																																																																			3
AATTAA	1																																																																			1
AATTTA	3																																																																			3
AATTTT	1																																																																			1
ACAACT	1																																																																			1
ACAATA		1																																																																		1
ACAATT	1																																																																			1
ACACAT	1																																																																			1
ACACCC		1																																																																		1
ACATTT	1																																																																			1
ACCCGA	1																																																																			1
ACGACC	1																																																																			1
ACGATG	1																																																																			1
ACGTCA	1																																																																			1
ACTTTG	1																																																																			1
AGAAAA	3	2																																																																		5
AGAAAG	1																																																																			1
AGAAGT	1																																																																			1
AGACGG	1																																																																			1
AGAGAA	2																																																																			2
AGAGCC	1																																																																			1
AGAGCT	1																																																																			1
AGCATC	1																																																																			1
AGCGGG	1																																																																			1
AGCTGC	1																																																																			1
AGGACA	1																																																																			1
AGGAGA	1																																																																			1
AGGAGC	1																																																																			1
AGGCGA	1																																																																			1
AGGGAG	1																																																																			1
AGGGCA	2																																																																			2
AGGGTC	1																																																																			1
AGGTGG		1																																																																		1
AGTAGA	1																																																																			1
AGTGGT	1			1																																																																2
AGTTGT	1																																																																			1
ATAAAA	3																																																																			3
ATAATC	1																																																																			1
ATAATT	4																																																																			4
ATAGTA	1																																																																			1
ATATCA	1																																																																			1
ATATTA	2																																																																			2
ATCAAA		1																																																																		1
ATCCAC	1																																																																			1
ATCGTG	1																																																																			1
ATCTAG	1																																																																			1
ATGACG		1																																																																		1
ATGAGA	1																																																																			1
ATGATT	1																																																																			1
ATGCTG	1																																																																			1
ATGGTA	1																																																																			1
ATTAAT	1																																																																			1
ATTATA	3																																																																			3
ATTTAA	4																																																																			4
ATTTTT	5																																																																			5
CAACAG	2																																																																			2
CAACAT	1																																																																			1
CAACCC	1																																																																			1
CAAGAA	1																																																																			1
CACCAA	1																																																																			1
CACCAG		1																																																																		1
CACTCT	1																																																																			1
CAGAAA	1																																																																			1
CAGCAA	3																																																																			3
CAGCAT	1																																																																			1
CAGCCC	1																																																																			1
CAGCCG	1																																																																			1
CAGCTC	1																																																																			1
CAGCTT	1																																																																			1
CAGGCT	1	1																																																																		2
CAGGGA	1																																																																			1
CAGTAG	1																																																																			1
CAGTCA	1																																																																			1
CAGTGG		1																																																																		1
CATATA	1																																																																			1
CATCAA	1																																																																			1
CATCAC	1																																																																			1
CATCCC	1																																																																			1
CATCCT													1																																																							1
CATCGG	1																																																																			1
CATGAA	1																																																																			1
CATTTC		1																																																																		1
CCAAAA	1																																																																			1
CCAAAC	1																																																																			1
CCAAGA	1																																																																			1
CCACAG	1																																																																			1
CCAGCT	1																																																																			1
CCAGGA	1																																																																			1
CCAGGT		1																																																																		1
CCATGT	1																																																																			1
CCATTC	1																																																																			1
CCCAAA	1																																																																			1
CCCGAA	1																																																																			1
CCCGAC	1																																																																			1
CCCGAG				1																																																																1
CCCTCT	1		1																																																																	2
CCGAAC	1																																																																			1
CCGCAG	1																																																																			1
CCGCCA	1																																																																			1
CCGCCT	1																																																																			1
CCGCTG	1																																																																			1
CCGGAG	1																																																																			1
CCGTGG	2																																																																			2
CCTCCG	1																																																																			1
CCTCTC	1																																																																			1
CCTGCC	1																																																																			1
CCTTTC	1																																																																			1
CCTTTT	1																																																																			1
CGACTC	1																																																																			1
CGATAG		1																																																																		1
CGATGA	1																																																																			1
CGCACA	1																																																																			1
CGCAGC	1																																																																			1
CGCTCA	1																																																																			1
CGGAGC	1																																																																			1
CGGCAG		1																																																																		1
CGGCTG	1																																																																			1
CGTCCG	1																																																																			1
CGTGAT	1																																																																			1
CTAATT	1																																																																			1
CTACCA																													1																																							1
CTACTG	1																																																																			1
CTATAC	1																																																																			1
CTATGA	1																																																																			1
CTCACA	1																																																																			1
CTCATC	2																																																																			2
CTCCTG	1																																																																			1
CTCTCC	1																																																																			1
CTCTTC	3																																																																			3
CTGCCG	1																																																																			1
CTGCGA		1																																																																		1
CTGCTC	1																																																																			1
CTGGAG	1																																																																			1
CTGGCG	1																																																																			1
CTGGCT	1																																																																			1
CTTCCT	1																																																																			1
CTTCTC	1	1																																																																		2
CTTTTG		1																																																																		1
CTTTTT	4	2																																																																		6
GAAAAA	4	2																																																																		6
GAAAAG	2																																																																			2
GAAAAT	1																																																																			1
GAAGAC	2																																																																			2
GAAGAG	1																																																																			1
GAAGGA	1																																																																			1
GACATG	1																																																																			1
GACGAA	1																																																																			1
GACGAT	1																																																																			1
GACTGC	1																																																																			1
GAGAAT		1																																																																		1
GAGCCA	2																																																																			2
GAGGAA	1																																																																			1
GAGGAC	1																																																																			1
GAGGAT	2																																																																			2
GAGGGA	1																																																																			1
GAGGTC	1																																																																			1
GATCCC	1																																																																			1
GATCCT	1																																																																			1
GATCTA	2																																																																			2
GATGAG	2																																																																			2
GATGGC	1																																																																			1
GATGGT	1																																																																			1
GATTGG	1																																																																			1
GCAAAA	1																																																																			1
GCAACA		1																																																																		1
GCAATG	1																																																																			1
GCAGCG	1																																																																			1
GCCACA			1																																																																	1
GCCACC	1																																																																			1
GCCCCC	1																																																																			1
GCCGAT	1																																																																			1
GCCGCT	1																																																																			1
GCCTCG	1																																																																			1
GCGATG	1																																																																			1
GCGATT	1																																																																			1
GCGCAC	1																																																																			1
GCGCGG	1																																																																			1
GCGCTC	1																																																																			1
GCGGCT		1																																																																		1
GCTAGA	1																																																																			1
GCTCTC	1																																																																			1
GCTGCG	1																																																																			1
GCTTCC	1																																																																			1
GCTTCG	1																																																																			1
GCTTGG	1																																																																			1
GGAAAA					1																																																															1
GGACTT	1																																																																			1
GGAGAG		1																																																																		1
GGAGCA	1																																																																			1
GGAGCC	1																																																																			1
GGAGCG		1																																																																		1
GGAGGG	1																																																																			1
GGCGTC	1																																																																			1
GGCTCC	3																																																																			3
GGCTGC	3	1																																																																		4
GGGAGA	1																																																																			1
GGGATC	1																																																																			1
GGGATG	1																																																																			1
GGGCTG	1																																																																			1
GGGGCT	1																																																																			1
GGGGGA	2																																																																			2
GGGGTT	1																																																																			1
GGGTGA	1																																																																			1
GGTACT	1																																																																			1
GGTCAT	1																																																																			1
GGTGTG	1																																																																			1
GGTTAT	1																																																																			1
GTAAAA	1																																																																			1
GTAGTG																			1																																																	1
GTCCTT					1																																																															1
GTGGCA	1																																																																			1
GTGGCC	1																																																																			1
GTGGGG	1																																																																			1
GTGGTT	1																																																																			1
GTGTGA	1																																																																			1
GTGTTG		1																																																																		1
GTTGCA	1																																																																			1
GTTGGC		1																																																																		1
GTTGGT		1																																																																		1
GTTGTC	1																																																																			1
TAATAT	9																																																																			9
TAATTA	2																																																																			2
TAATTT	1																																																																			1
TACACA	1																																																																			1
TACCAC																												1																																								1
TAGTGG	2																																																																			2
TATAAT	1	1																																																																		2
TATCGT	1																																																																			1
TATCTT	1																																																																			1
TATGAT	1																																																																			1
TATGCA	1																																																																			1
TATTAA	2																																																																			2
TATTTT	2																																																																			2
TCAACA	1																																																																			1
TCACAT	1																																																																			1
TCAGCC	1																																																																			1
TCAGGC	1																																																																			1
TCATCG	2																																																																			2
TCATTG	1																																																																			1
TCATTT	1																																																																			1
TCCAAT	1																																																																			1
TCCAGC	2																																																																			2
TCCCGA	1																																																																			1
TCCCTA		1																																																																		1
TCCCTC	1																																																																			1
TCCCTG	1																																																																			1
TCCGAC	1																																																																			1
TCCTCG	2																																																																			2
TCCTCT	2																																																																			2
TCCTGT	1																																																																			1
TCGCTA	1																																																																			1
TCGCTG	1																																																																			1
TCGGGC	1																																																																			1
TCGGTC	1																																																																			1
TCGTCA	2																																																																			2
TCGTCT	1																																																																			1
TCGTTG	1																																																																			1
TCTACG	1																																																																			1
TCTATA	1																																																																			1
TCTCAT	1																																																																			1
TCTCCT	1																																																																			1
TCTCGC	1																																																																			1
TCTGAG	1																																																																			1
TCTGCG	1																																																																			1
TCTGCT	1																																																																			1
TCTGTT	1																																																																			1
TCTTAT	1																																																																			1
TCTTCC	2																																																																			2
TCTTCG	1																																																																			1
TCTTGT	2																																																																			2
TCTTTC	1																																																																			1
TCTTTG	1																																																																			1
TCTTTT	2																																																																			2
TGAAAC		1																																																																		1
TGAAGA		1																																																																		1
TGACGA	1																																																																			1
TGACGC	1																																																																			1
TGAGAA	1																																																																			1
TGAGAG		1																																																																		1
TGAGGA				1																																																																1
TGAGGG	1																																																																			1
TGATGC	1																																																																			1
TGCAGA	1																																																																			1
TGCAGC	1																																																																			1
TGCCGC	1																																																																			1
TGCTGG		1																																																																		1
TGCTGT	2																																																																			2
TGCTTC	1																																																																			1
TGCTTT	1																																																																			1
TGGCAT	1																																																																			1
TGGGTG		1																																																																		1
TGGTAG						1																																																														1
TGGTCT	1																																																																			1
TGGTTG	1																																																																			1
TGTACA	1																																																																			1
TGTATA	1																																																																			1
TGTGAA	1																																																																			1
TGTGAT	1																																																																			1
TGTGGT			1																																																																	1
TGTGTA	1																																																																			1
TGTTCC	1																																																																			1
TGTTTT	1																																																																			1
TTAAAA	1																																																																			1
TTAATA	10																																																																			10
TTAATT	2																																																																			2
TTATTT	7																																																																			7
TTCAGG	1																																																																			1
TTCCTC	1																																																																			1
TTCGGG	1																																																																			1
TTCTAC	1																																																																			1
TTCTCA	2																																																																			2
TTCTTT	3	2																																																																		5
TTGATT		1																																																																		1
TTGCCA	1																																																																			1
TTGCCG	1																																																																			1
TTGGGA	2	1																																																																		3
TTGGGG	1																																																																			1
TTGTTA		1																																																																		1
TTTAAT	1																																																																			1
TTTAGA	1																																																																			1
TTTATA	1																																																																			1
TTTATT	6	2		1	1																																																															10
TTTCAA		1																																																																		1
TTTCAC	1																																																																			1
TTTCCT	1																																																																			1
TTTCTA	1																																																																			1
TTTCTC	1																																																																			1
TTTCTT		1		1																																																																2
TTTGAT	1																																																																			1
TTTGGG		1																																																																		1
TTTGTT	1																																																																			1
TTTTAA	1																																																																			1
TTTTAT	7	1	1																																																																	9
TTTTCC	1	1																																																																		2
TTTTCT	9	2	1																																																																	12
TTTTGT	1	1																																																																		2
TTTTTA	11	1																																																																		12
TTTTTC	8	3	1																																																																	12

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	47	45	30	32	27	33	36	23	35	25	19	15	11	17	7	8	10	13	9	7	6	5	9		3	4	2	4	2	3	1	3	2						1				1							1	496
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	6	2	7	4	1	5	3		1				1																																						30
AC/GT	-	-	-	35	12	14	7	6	4	5	5	5	1	2	2			2	1			1				1		1	1										1				1						1																			108
AG/CT	-	-	-	110	48	23	20	18	12	5	6	9	2	2	3	3	4	1	1	1	1		1		1		1				1													1																								274
AT/AT	-	-	-	182	76	43	26	14	5	7	3	1		1	1	1																																																				360
CG/CG	-	-	-	2																																																																2
AAC/GTT	-	-	27	10	6	2	1	1	3			1				1																																																				52
AAG/CTT	-	-	52	20	12	9	4	4	4	3	3	1	1	1	1	1							1												1						1																											119
AAT/ATT	-	-	53	19	14	4	3	3	2	1		1			1		1																																																			102
ACC/GGT	-	-	24	3	4	4																																																														35
ACG/CGT	-	-	8	2				1																																																												11
ACT/AGT	-	-	9	7	6	1	2		2	1	1	1																										1																														31
AGC/CTG	-	-	21	10	7	5	2	3	2																																																											50
AGG/CCT	-	-	14	7	2		1	4						1																																																						29
ATC/ATG	-	-	26	13	7	1	1																																																													48
CCG/CGG	-	-	21	4																																																																25
AAAC/GTTT	-	3																																																																		3
AAAG/CTTT	-	62	25	7	4	4		1	1		2	1				1																																																				108
AAAT/ATTT	-	57	13	6	1																																																															77
AACC/GGTT	-	4	1																																																																	5
AACT/AGTT	-		1																																																																	1
AAGC/CTTG	-	2																																																																		2
AAGG/CCTT	-	5	2																																																																	7
AAGT/ACTT	-	1																																																																		1
AATC/ATTG	-	21	6	5	1																																																															33
AATG/ATTC	-	12	3	1																																																																16
AATT/AATT	-	12	2	1																																																																15
ACAG/CTGT	-	1	2																																																																	3
ACAT/ATGT	-	37	10	5	2		1								1																																																					56
ACCG/CGGT	-	1																																																																		1
ACCT/AGGT	-	6																																																																		6
ACTC/AGTG	-	6	1	1		1																																																														9
ACTG/AGTC	-	2																																																																		2
AGAT/ATCT	-	8	1				1	1																																																												11
AGCC/CTGG	-	1																																																																		1
AGCG/CGCT	-	2																																																																		2
AGCT/AGCT	-	1																																																																		1
AGGG/CCCT	-	2	1																																																																	3
ATCC/ATGG	-	3			1																																																															4
ATGC/ATGC	-	2																																																																		2
AAAAC/GTTTT	16	3	1	1																																																																21
AAAAG/CTTTT	183	54	19	5	2			2																																																												265
AAAAT/ATTTT	154	35	4	3						1												1																																														198
AAACC/GGTTT	7																																																																			7
AAACG/CGTTT	2																																																																			2
AAACT/AGTTT	6																																																																			6
AAAGC/CTTTG	9		1																																																																	10
AAAGG/CCTTT	22	3	2																																																																	27
AAAGT/ACTTT	3																																																																			3
AAATC/ATTTG	6	3	1																																																																	10
AAATG/ATTTC	11		1																																																																	12
AAATT/AATTT	54	3																																																																		57
AACAC/GTGTT	4																																																																			4
AACCC/GGGTT	9																																																																			9
AACCG/CGGTT	4																																																																			4
AACCT/AGGTT	3	2																																																																		5
AACGC/CGTTG	1																																																																			1
AACTG/AGTTC	3																																																																			3
AAGAC/CTTGT	3																																																																			3
AAGAG/CTCTT	16	1			1																																																															18
AAGAT/ATCTT	3																																																																			3
AAGCC/CTTGG	1																																																																			1
AAGCG/CGCTT	1																																																																			1
AAGCT/AGCTT	1																																																																			1
AAGGC/CCTTG	1																																																																			1
AAGGG/CCCTT	10	1																																																																		11
AAGGT/ACCTT	1																																																																			1
AAGTC/ACTTG	3																																																																			3
AAGTG/ACTTC	3																																																																			3
AATAC/ATTGT	5																																																																			5
AATAG/ATTCT	2	1																																																																		3
AATAT/ATATT	30	2																																																																		32
AATCC/ATTGG	5	2																																																																		7
AATCG/ATTCG	1																																																																			1
AATCT/AGATT	1	1																																																																		2
AATGC/ATTGC	5	1																																																																		6
AATGG/ATTCC	1	1																																																																		2
AATGT/ACATT	1	1																																																																		2
AATTC/AATTG	7																																																																			7
ACACC/GGTGT	2																																																																			2
ACACG/CGTGT	2	1																																																																		3
ACACT/AGTGT	2																																																																			2
ACAGC/CTGTG	1																																																																			1
ACAGG/CCTGT	3																																																																			3
ACAGT/ACTGT	10																																																																			10
ACATC/ATGTG	2																																																																			2
ACATG/ATGTC	5	1																																																																		6
ACCAG/CTGGT	2																																																																			2
ACCAT/ATGGT	3		1																																																																	4
ACCCC/GGGGT	4																																																																			4
ACCCG/CGGGT	1																																																																			1
ACCCT/AGGGT	2																																																																			2
ACCGG/CCGGT	2																																																																			2
ACCGT/ACGGT	3																																																																			3
ACCTC/AGGTG	1																																																																			1
ACCTG/AGGTC	3																																																																			3
ACGAG/CGTCT	2	1																																																																		3
ACGCC/CGTGG	1																																																																			1
ACGGC/CCGTG	1																																																																			1
ACGGG/CCCGT	1																																																																			1
ACTAG/AGTCT	3	1																																																																		4
ACTAT/AGTAT	4																																																																			4
ACTCC/AGTGG	1																																																																			1
ACTCG/AGTCG	1																																																																			1
ACTCT/AGAGT	2																																																																			2
ACTGG/AGTCC		1																																																																		1
AGAGG/CCTCT	9	1	1																																																																	11
AGATC/ATCTG	1	2																																																																		3
AGATG/ATCTC	9	1	1																																																																	11
AGCAT/ATGCT	1																																																																			1
AGCCC/CTGGG	2																																																																			2
AGCCG/CGGCT	2																																																																			2
AGCGG/CCGCT	1																																																																			1
AGCTC/AGCTG	4																																																																			4
AGGAT/ATCCT	5	1																																																																		6
AGGCG/CCTCG	2	1																																																																		3
AGGGC/CCCTG	1																																																																			1
AGGGG/CCCCT	10																																																																			10
ATATC/ATATG	10																																																																			10
ATCCC/ATGGG	4	1																																																																		5
CCGCG/CGCGG	1																																																																			1
AAAAAC/GTTTTT	4	1																																																																		5
AAAAAG/CTTTTT	60	22	4	2																																																																88
AAAAAT/ATTTTT	67	8	1	1	1																																																															78
AAAACC/GGTTTT	2																																																																			2
AAAAGC/CTTTTG	3	1																																																																		4
AAAAGG/CCTTTT	9	1			1																																																															11
AAAAGT/ACTTTT	2																																																																			2
AAAATC/ATTTTG	2	2																																																																		4
AAAATG/ATTTTC	2																																																																			2
AAAATT/AATTTT	11																																																																			11
AAACAC/GTGTTT	2																																																																			2
AAACAG/CTGTTT	2																																																																			2
AAACCC/GGGTTT	4	1																																																																		5
AAACGG/CCGTTT	1																																																																			1
AAACTG/AGTTTC		1																																																																		1
AAAGAC/CTTTGT	2																																																																			2
AAAGAG/CTCTTT	8																																																																			8
AAAGAT/ATCTTT	1																																																																			1
AAAGCC/CTTTGG	1																																																																			1
AAAGGG/CCCTTT	1																																																																			1
AAAGTC/ACTTTG	1																																																																			1
AAAGTG/ACTTTC	1																																																																			1
AAATAG/ATTTCT	1																																																																			1
AAATAT/ATATTT	1																																																																			1
AAATCC/ATTTGG	1																																																																			1
AAATCT/AGATTT	2																																																																			2
AAATGG/ATTTCC		1																																																																		1
AAATGT/ACATTT	1																																																																			1
AAATTG/AATTTC		1																																																																		1
AAATTT/AAATTT	7																																																																			7
AACAAG/CTTGTT	5																																																																			5
AACAAT/ATTGTT		2																																																																		2
AACACC/GGTGTT	1	3																																																																		4
AACAGC/CTGTTG	7	1																																																																		8
AACAGG/CCTGTT	2																																																																			2
AACATC/ATGTTG	3																																																																			3
AACATG/ATGTTC	1																																																																			1
AACCAC/GGTTGT	2		1																																																																	3
AACCAT/ATGGTT	1																																																																			1
AACCCC/GGGGTT	3																																																																			3
AACCCG/CGGGTT	4																																																																			4
AACCTG/AGGTTC	1																																																																			1
AACGAC/CGTTGT	2																																																																			2
AACGAT/ATCGTT	1																																																																			1
AACGCC/CGTTGG		1																																																																		1
AACGGC/CCGTTG	1																																																																			1
AACGTC/ACGTTG	1																																																																			1
AACTAC/AGTTGT	2																																																																			2
AACTGC/AGTTGC	1																																																																			1
AAGAAT/ATTCTT	1																																																																			1
AAGACC/CTTGGT	2																																																																			2
AAGACG/CGTCTT	5																																																																			5
AAGAGG/CCTCTT	12																																																																			12
AAGATG/ATCTTC		1																																																																		1
AAGCAG/CTGCTT	2																																																																			2
AAGCCC/CTTGGG	1																																																																			1
AAGCCG/CGGCTT	1	1																																																																		2
AAGCGG/CCGCTT	1																																																																			1
AAGCTG/AGCTTC	1																																																																			1
AAGGAC/CCTTGT	1				1																																																															2
AAGGAG/CCTTCT	4	1																																																																		5
AAGGCG/CCTTCG	1																																																																			1
AAGGGC/CCCTTG	2																																																																			2
AAGTAG/ACTTCT	3																																																																			3
AAGTCC/ACTTGG	1																																																																			1
AATAGT/ACTATT	1																																																																			1
AATATC/ATATTG	1																																																																			1
AATATT/AATATT	27																																																																			27
AATCAC/ATTGTG	1																																																																			1
AATCAT/ATGATT	3																																																																			3
AATCCC/ATTGGG	3	1																																																																		4
AATCGC/ATTGCG	1																																																																			1
AATGAC/ATTGTC	1																																																																			1
AATGAG/ATTCTC	5	1																																																																		6
AATGCC/ATTGGC	1																																																																			1
AATGGC/ATTGCC	2																																																																			2
AATGGG/ATTCCC	1																																																																			1
AATGGT/ACCATT	1																																																																			1
AATGTG/ACATTC	2																																																																			2
AATTAC/AATTGT	1																																																																			1
AATTAG/AATTCT	1																																																																			1
AATTAT/AATTAT	10	1																																																																		11
AATTCC/AATTGG	1																																																																			1
ACACAT/ATGTGT	3																																																																			3
ACACCC/GGGTGT	1	2																																																																		3
ACACGC/CGTGTG	1																																																																			1
ACACTC/AGTGTG	2																																																																			2
ACAGCC/CTGTGG	1		1																																																																	2
ACAGCG/CGCTGT	1																																																																			1
ACAGGG/CCCTGT	2																																																																			2
ACAGTC/ACTGTG	1																																																																			1
ACATAT/ATATGT	2																																																																			2
ACATCC/ATGTGG	1																																																																			1
ACATGG/ATGTCC	2																																																																			2
ACATGT/ACATGT	1																																																																			1
ACCACG/CGTGGT	1																																																																			1
ACCACT/AGTGGT	3			1		1													1									1	1																																							8
ACCAGC/CTGGTG		2																																																																		2
ACCAGG/CCTGGT	1																																																																			1
ACCAGT/ACTGGT	1																																																																			1
ACCATC/ATGGTG	2																																																																			2
ACCATG/ATGGTC	1																																																																			1
ACCCCC/GGGGGT	1																																																																			1
ACCCCG/CGGGGT	1																																																																			1
ACCCTC/AGGGTG	2																																																																			2
ACCCTG/AGGGTC	1																																																																			1
ACCGAG/CGGTCT	1																																																																			1
ACCGCC/CGGTGG	2																																																																			2
ACCTAT/AGGTAT	1																																																																			1
ACCTCC/AGGTGG		1																																																																		1
ACCTCG/AGGTCG	1																																																																			1
ACCTGG/AGGTCC		1																																																																		1
ACGAGG/CCTCGT	3																																																																			3
ACGATC/ATCGTG	2																																																																			2
ACGATG/ATCGTC	8	1																																																																		9
ACGCAG/CGTCTG	1																																																																			1
ACGCCG/CGGCGT	1																																																																			1
ACGCGC/CGCGTG	1																																																																			1
ACGCGG/CCGCGT	1																																																																			1
ACGCTC/AGCGTG	1																																																																			1
ACGCTG/AGCGTC	1																																																																			1
ACGGAG/CCGTCT	1																																																																			1
ACGGCC/CCGTGG	3																																																																			3
ACGTAG/ACGTCT	1																																																																			1
ACTATG/AGTCAT	1																																																																			1
ACTCAG/AGTCTG	1																																																																			1
ACTCCG/AGTCGG	2																																																																			2
ACTCTC/AGAGTG	1	1																																																																		2
ACTGCC/AGTGGC	1	1																																																																		2
ACTGCG/AGTCGC	1	1																																																																		2
ACTGCT/AGCAGT	2																																																																			2
AGAGCC/CTCTGG	4																																																																			4
AGAGCG/CGCTCT	2																																																																			2
AGAGCT/AGCTCT	2																																																																			2
AGAGGG/CCCTCT	7	1	1																																																																	9
AGATAT/ATATCT	1																																																																			1
AGATCT/AGATCT	3																																																																			3
AGATGC/ATCTGC	1																																																																			1
AGCAGG/CCTGCT	4																																																																			4
AGCATC/ATGCTG	4																																																																			4
AGCCCC/CTGGGG	3																																																																			3
AGCCCG/CGGGCT	1			1																																																																2
AGCCGC/CGGCTG	8	2																																																																		10
AGCCGG/CCGGCT	6																																																																			6
AGCCTC/AGGCTG	1																																																																			1
AGCCTG/AGGCTC	2	1																																																																		3
AGCGAT/ATCGCT	1	1																																																																		2
AGCGCC/CGCTGG	1																																																																			1
AGCGCG/CGCGCT	1																																																																			1
AGCGGC/CCGCTG	5	1																																																																		6
AGCGGG/CCCGCT	1	1																																																																		2
AGCTCC/AGCTGG	5																																																																			5
AGCTGC/AGCTGC	2																																																																			2
AGGATC/ATCCTG	1																																																																			1
AGGATG/ATCCTC	6			1									1																																																							8
AGGCCG/CCTCGG	1																																																																			1
AGGCGG/CCGCCT	2																																																																			2
AGGGAT/ATCCCT		1																																																																		1
AGGGGC/CCCCTG	1																																																																			1
AGGGGG/CCCCCT	3																																																																			3
ATATGC/ATATGC	1																																																																			1
ATCCCC/ATGGGG	2																																																																			2
ATCCCG/ATCGGG	3																																																																			3
ATCGCC/ATGGCG	2																																																																			2
ATCGGC/ATGCCG	2																																																																			2
CCCCCG/CGGGGG	1																																																																			1
CCCGCG/CGCGGG	1																																																																			1
