Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-90/megassr/results/hub_GCA_027055555.2/fasta/hub_GCA_027055555.2_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              81
Total size of examined sequences (bp):           5192967
Total number of identified SSRs:                 22
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	5
4	1
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1			1
CG	-	-	-	3		1	4
GC	-	-	-	2			2
AGC	-	-	1				1
CCG	-	-	1				1
CGG	-	-	1				1
GCG	-	-	2				2
GCCA	-	1					1
CGCGC	1						1
GCGCA	1						1
GCGCC	1						1
ATGGTC			1				1
CTGGCG	1						1
GAAGTC	1						1
GATGCT	1						1
GCCAGC	1						1
TCTTCC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1			1
CG/CG	-	-	-	5		1	6
AGC/CTG	-	-	1				1
CCG/CGG	-	-	4				4
AGCC/CTGG	-	1					1
AGCGC/CGCTG	1						1
CCGCG/CGCGG	2						2
AAGAGG/CCTCTT	1						1
AAGTCG/ACTTCG	1						1
ACCATG/ATGGTC			1				1
AGCATC/ATGCTG	1						1
AGCGCC/CGCTGG	2						2
