Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-85/megassr/results/hub_GCA_027055335.1/fasta/hub_GCA_027055335.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              56
Total size of examined sequences (bp):           4614801
Total number of identified SSRs:                 24
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	8
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	4	1							5
GC	-	-	-	2								2
CGG	-	-	2	1								3
CTG	-	-							1			1
GCC	-	-	1									1
GCG	-	-	2									2
GCT	-	-	1									1
CGCCG	1											1
CGCGC	2											2
GCGCA	1											1
ACCACG											1	1
CCGGAG		1										1
CGACTT	1											1
CTGGCG	1											1
GCCAGC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	6	1							7
AGC/CTG	-	-	1						1			2
CCG/CGG	-	-	5	1								6
AGCGC/CGCTG	1											1
CCGCG/CGCGG	3											3
AAGTCG/ACTTCG	1											1
ACCACG/CGTGGT											1	1
AGCCGG/CCGGCT		1										1
AGCGCC/CGCTGG	2											2
