Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-7/megassr/results/hub_GCA_025791775.1/fasta/hub_GCA_025791775.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              89
Total size of examined sequences (bp):           4747470
Total number of identified SSRs:                 121
Number of SSR containing sequences:              53
Number of sequences containing more than 1 SSR:  34
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	19
3	23
4	1
5	12
6	66

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AC	-	-	-	1											1
CG	-	-	-	9											9
CT	-	-	-	1											1
GC	-	-	-	8											8
ACC	-	-	1												1
CAG	-	-	2			1									3
CCA	-	-	1												1
CCG	-	-	3												3
CGG	-	-	4			1									5
CTG	-	-	1												1
GCA	-	-	1												1
GCC	-	-	2	1											3
GCG	-	-	1												1
GGC	-	-	2												2
GTG	-	-	1												1
TGG	-	-	1												1
GTGC	-	1													1
ACCCC	1														1
AGCCA	1														1
CCGGG	1														1
GCCGC	1														1
GCCGT	1														1
GCGCG	3														3
GCTGG	1														1
GGCCG	1														1
GGGCC	1														1
TGTGC	1														1
AACCAG	1														1
AAGATC	1														1
AAGGCA	1														1
AGCAAC					1										1
CAACAG	1														1
CAACGG		1													1
CAACGT	1														1
CAGCAT	1														1
CAGGCG	1														1
CCGCAG	1														1
CCGCCT	1														1
CCGGAG	1														1
CCGGCG		1													1
CCGTGG	1														1
CCGTTC	1														1
CCTCGT	1														1
CCTTGC	1														1
CTGATG			1												1
CTGCAG	1														1
GAGTAC	1														1
GCAAAA	1														1
GCAACA	2					1									3
GCAACT	1														1
GCCAGG	1														1
GCCGCA	1														1
GCCGTT	1														1
GCTGGC	1														1
GCTGTT	3	1	1												5
GCTTCT	1														1
GCTTTG		1													1
GCTTTT		1													1
GGATCG			1												1
GGCAAC	1	1													2
GGCCAG	1														1
GGGCCT	1														1
GGTGGC	1														1
GGTGTC	1														1
GTGCTG	1														1
GTTGAC	1														1
GTTGCA	1														1
GTTGCC		1													1
GTTGGT	1														1
TCAAAT		1													1
TCACGA	1														1
TGCCCT	1														1
TGCTGT		2												1	3
TGGCCG	1														1
TGGCTT		1													1
TTCTGG	1														1
TTGACG	4	1													5
TTGCCG			1												1
TTGGCT													1		1
TTTGCT	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AC/GT	-	-	-	1											1
AG/CT	-	-	-	1											1
CG/CG	-	-	-	17											17
ACC/GGT	-	-	4												4
AGC/CTG	-	-	4			1									5
CCG/CGG	-	-	12	1		1									14
ACGC/CGTG	-	1													1
AAGCC/CTTGG	1														1
ACAGC/CTGTG	1														1
ACCCC/GGGGT	1														1
ACGGC/CCGTG	1														1
AGCCC/CTGGG	1														1
CCCGG/CCGGG	3														3
CCGCG/CGCGG	4														4
AAAAGC/CTTTTG	2	1													3
AAAGCC/CTTTGG		2											1		3
AAAGGC/CCTTTG	1														1
AAATTC/AATTTG		1													1
AACACC/GGTGTT	1														1
AACAGC/CTGTTG	6	3	1		1	1								1	13
AACCAG/CTGGTT	2														2
AACGGC/CCGTTG	2	3	1												6
AACGGG/CCCGTT	1														1
AACGTC/ACGTTG	6	1													7
AACTGC/AGTTGC	2														2
AAGATC/ATCTTG	1														1
AAGCAG/CTGCTT	1														1
AAGGGC/CCCTTG	2														2
ACACCG/CGGTGT	1														1
ACCAGC/CTGGTG	1														1
ACCGCC/CGGTGG	1														1
ACGAGG/CCTCGT	1														1
ACGAGT/ACTCGT	1														1
ACGATC/ATCGTG	1														1
ACGGCC/CCGTGG	2														2
AGCATC/ATGCTG	1		1												2
AGCCGC/CGGCTG	2														2
AGCCGG/CCGGCT	1														1
AGCGCC/CGCTGG	1														1
AGCTGC/AGCTGC	1														1
AGGCCC/CCTGGG	1														1
AGGCGC/CCTGCG	1														1
AGGCGG/CCGCCT	1														1
AGGGCC/CCCTGG	2														2
ATCCCG/ATCGGG			1												1
CCGGCG/CCGGCG		1													1
