Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-14/megassr/results/hub_GCA_025630815.1/fasta/hub_GCA_025630815.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              11
Total size of examined sequences (bp):           3433791
Total number of identified SSRs:                 10
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	4
5	5
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AGC	-	-		1	1
CAT	-	-	1		1
CGG	-	-	1		1
TCA	-	-	1		1
AATCA	1				1
GAAAA	1				1
GAAAT	1				1
GTTAC	1				1
TAAAA	1				1
CGATGG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AGC/CTG	-	-		1	1
ATC/ATG	-	-	2		2
CCG/CGG	-	-	1		1
AAAAG/CTTTT	1				1
AAAAT/ATTTT	1				1
AAATC/ATTTG	1				1
AAATG/ATTTC	1				1
AACGT/ACGTT	1				1
ATCGCC/ATGGCG	1				1
