Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-13/megassr/results/hub_GCA_024610785.1/fasta/hub_GCA_024610785.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              38
Total size of examined sequences (bp):           4896748
Total number of identified SSRs:                 13
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	5
5	1
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
GC	-	-	-	2	2
ACG	-	-		1	1
CGG	-	-	1		1
CTG	-	-	1		1
GCA	-	-	1		1
GGC	-	-	1		1
TCCTC	1				1
AAACAG	1				1
ACCATG			1		1
CTCCGG	1				1
GCGCCA	1				1
GGTGTC			1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	2	2
ACG/CGT	-	-		1	1
AGC/CTG	-	-	2		2
CCG/CGG	-	-	2		2
AGAGG/CCTCT	1				1
AAACAG/CTGTTT	1				1
ACACCG/CGGTGT			1		1
ACCATG/ATGGTC			1		1
AGCCGG/CCGGCT	1				1
AGCGCC/CGCTGG	1				1
