Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-12/megassr/results/hub_GCA_024605675.1/fasta/hub_GCA_024605675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              10
Total size of examined sequences (bp):           2286080
Total number of identified SSRs:                 10
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	5
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
GC	-	-	-	1	1
ATC	-	-	1		1
CAG	-	-	1		1
CCG	-	-	1		1
CTG	-	-	2		2
ACCATG			1		1
GCGCCA	1				1
GCGTCT	1				1
TGCCTG			1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	1	1
AGC/CTG	-	-	3		3
ATC/ATG	-	-	1		1
CCG/CGG	-	-	1		1
ACAGGC/CCTGTG			1		1
ACCATG/ATGGTC			1		1
ACGCAG/CGTCTG	1				1
AGCGCC/CGCTGG	1				1
